[gmx-users] More accurate potential energy in output?
Markus Kaukonen
markus.kaukonen at iki.fi
Wed Jul 11 21:14:39 CEST 2012
Dear Gromacs,
I'm trying to build a QM/MM with gromacs as MM.
The thing would be run by ASE-simulation environment
(https://wiki.fysik.dtu.dk/ase/).
Question: I'm trying to get the potential energy of a single atomic
configutation.
Is it possible to get the potential energy of a given configuration
with more than 5 digits?
Both the log file and gmxdump -e give me only 5 digits. The .mdp file
I used is below.
terveisin, Markus
;=======================================================
;Gromacs input file
;Created using the Atomic Simulation Environment (ASE)
;=======================================================
rlist = 0.0 ;
nstlist = 1 ;
pbc = no ;
integrator = md ; md: molecular dynamics(Leapfrog),
rvdw = 0.0 ;
nstlog = 1 ;
nstenergy = 1 ;
rcoulomb = 0.0 ;
energygrps = System ;
ns_type = grid ;
nsteps = 0 ;
nstfout = 1 ;
define = -DFLEXIBLE ; flexible/ rigid water
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