[gmx-users] problems with pdb2gmx

[reisingere at rostlab.informatik.tu-muenchen.de]

Hi everybody,

I want to cap the terminal groups of my protein. I thought that I could
use the command "pdb2gmx -ter". But when I use it nothing happens.

I am not ask anything so I could not choose "none".
But when I just write "pdb2gmx -ter none" the following error comes up:

Invalid command line argument:
none


And there are also no terminal groups in my structure which could cap the
ends.

What can I do?

Thank you,
Eva