[gmx-users] Re: Error in Membrane simulations with POPC bilayer

J Peterson think_beyond at aol.com
Fri Jul 13 06:24:47 CEST 2012

Hi Justin,

I followed your comments and now at the stage of adding solvents.
I wonder to see the protein after shrinking step to have no SOL molecules as
there were SOL molecules in the source popc128b.pdb. Had we removed all the
original SOL molecules anywhere during the course of tutorial?

I also see one of the POPC molecules standing out (upside down) of the
bilayer area. How would that be adjusted?




View this message in context: http://gromacs.5086.n6.nabble.com/Error-in-Membrane-simulations-with-POPC-bilayer-tp4999161p4999393.html
Sent from the GROMACS Users Forum mailing list archive at Nabble.com.

More information about the gromacs.org_gmx-users mailing list