[gmx-users] g_saltbr speed

[Justin A. Lemkul]

On 7/13/12 12:05 PM, Kavyashree M wrote:
> Its 50ns 25000 frames. the xtc file is 695MB. it has 16GB RAM. So will
> that be insufficient? I have previously run other analysis which used to take
> huge memory, for eg. covariance analysis, in a system with much lesser memory
> even though CPU usage was low the job used to finish. But in this case its not
> so.
>

I can't see a reason why the file itself would present a problem.  I have run 
g_saltbr on similarly sized systems.  Sorry, I can't offer an explanation as to 
why it's stopping prematurely.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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