[gmx-users] Incorrect number of atomtypes for dihedral
Debashis Sahu
debashis.sahu87 at gmail.com
Fri Jul 20 20:26:34 CEST 2012
Dear user,
I have used this RB dihedral for thiourea in
ff-bonded.itp file, which is the error line mentioning below:
dih_THI_H_N_C_S 23.10000 -2.10000
-21.00000 0.00000 0.00000 0.00000
dih_THI_H_N_C_N 20.50160 0.00000
-20.50160 0.00000 0.00000 0.00000
The thiourea which I used in .rtp file given below:
[ THI ] ; thiourea added in by DEBASHIS SAHU
[ atoms ]
C opls_247 0.287 1
S opls_038 -0.523 2
N1 opls_249 0.076 3
H11 opls_250 0.021 4
H12 opls_250 0.021 5
N2 opls_249 0.076 6
H21 opls_250 0.021 7
H22 opls_250 0.021 8
[ bonds ]
C N1
C N2
C S
N1 H11
N1 H12
N2 H21
N2 H22
[ dihedrals ]
; ai aj ak al gromos type
S C N1 H12 dih_THI_H_N_C_S
S C N2 H22 dih_THI_H_N_C_S
N2 C N1 H11 dih_THI_H_N_C_N
N1 C N2 H21 dih_THI_H_N_C_N
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