[gmx-users] Re: Error in Membrane simulations with POPC bilayer

[J Peterson]

Thank you so much for that, Justin.

Now I could expand the bilayer. 

I've another query. My protein has a small N-terminal portion embedded in
the membrane, I would like to insert only this part into the membrane during
'packing the lipid around the protein' step in your tutorial. Initially I
was trying to do simulation only with this TM region and then attaching the
rest of the protein with this TM region and simulate the whole system. But
was time-taking.

Can you please guide me to pack the lipid bilayer only around a 33-residues
long peptide in my protein and rest with water?

Thanks,

Peterson J



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