[gmx-users] Re: Error in Membrane simulations with POPC bilayer
think_beyond at aol.com
Mon Jul 23 13:53:05 CEST 2012
Thank you so much for that, Justin.
Now I could expand the bilayer.
I've another query. My protein has a small N-terminal portion embedded in
the membrane, I would like to insert only this part into the membrane during
'packing the lipid around the protein' step in your tutorial. Initially I
was trying to do simulation only with this TM region and then attaching the
rest of the protein with this TM region and simulate the whole system. But
Can you please guide me to pack the lipid bilayer only around a 33-residues
long peptide in my protein and rest with water?
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