[gmx-users] Re: Error in Membrane simulations with POPC bilayer

Justin Lemkul jalemkul at vt.edu
Tue Jul 24 12:31:43 CEST 2012

On 7/24/12 2:49 AM, J Peterson wrote:
> Thanks for that comment.
> I've another query during inflating step in Justin's tutorial.
> In my case, during the inflation, 4 lipids from the upper and 2 lipids from
> the lower leaflets were removed.
> Would there be a problem in this sort non-uniform deletion (I mean like 4
> from upper and 4 from lower)?

In principle, no.  It sounds like you have an asymmetric protein, which thus 
requires an asymmetric modification to the bilayer.



Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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