[gmx-users] Re: Error in Membrane simulations with POPC bilayer

[Justin Lemkul]

On 7/24/12 2:49 AM, J Peterson wrote:
> Thanks for that comment.
>
> I've another query during inflating step in Justin's tutorial.
>
> In my case, during the inflation, 4 lipids from the upper and 2 lipids from
> the lower leaflets were removed.
> Would there be a problem in this sort non-uniform deletion (I mean like 4
> from upper and 4 from lower)?
>

In principle, no.  It sounds like you have an asymmetric protein, which thus 
requires an asymmetric modification to the bilayer.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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