[gmx-users] g_clustsize

[Justin Lemkul]

On 7/24/12 2:34 AM, mohammad agha wrote:
> Dear Gromacs Users,
>
> I don't know what is the quantity of -cut in g_clustsize for different systems, exactly!
>

It is the cutoff value that determines if two molecules are in the same cluster. 
  If atoms in different molecules have a distance less than the value specified 
in -cut, they are in the same cluster.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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