[gmx-users] p_N head group lipid orientation
jalemkul at vt.edu
Fri Jul 27 18:57:41 CEST 2012
On 7/27/12 12:50 PM, yousef nademi wrote:
> hi everybody
> i want to calculate the P_N orientation of dppc lipid bilayer but in g_angle index file shoud have at least 3 atom but in P_N vector i want to define 2 atom
> is there anyone know what should i do?
g_sgangle with the -z option (assuming the bilayer is in the x-y plane) should
do this. The index group can contain two atoms (or a suitable multiple of two
defining all the P and N atoms).
Justin A. Lemkul, Ph.D.
Department of Biochemistry
jalemkul[at]vt.edu | (540) 231-9080
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