[gmx-users] Incomplete frame
turgaycakmak34 at gmail.com
Fri Jun 1 14:54:48 CEST 2012
Thank you for your quick reply. I tried to concatanete the trajectory files
4 times. Three out of four try, I got same error massage.
But it worked for the last one.. It is a weird situation.. What could cause
2012/6/1 Justin A. Lemkul <jalemkul at vt.edu>
> On 6/1/12 8:02 AM, Turgay Cakmak wrote:
>> Hi gromacs users,
>> I concatenated 7 trajectory files (each one has 10ns simulation) using
>> "trajcat". Then, when I used "gmxcheck", I get following error.
>> Reading frame 0 time 0.000
>> # Atoms 68393
>> Precision 0.001 (nm)
>> Reading frame 13000 time 26000.000
>> *WARNING: Incomplete frame: nr 13739 time 27478
>> But, when I check the non-concatenated files with gmxcheck, I didn't get
>> I am so confused. Any suggestion will be really appreciated...
> Try the concatenation again. Perhaps a filesystem blip caused an
> incomplete frame to be written.
> Justin A. Lemkul, Ph.D.
> Research Scientist
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
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