[gmx-users] Incomplete frame

[Turgay Cakmak]

Hi Justin,

Thank you for your quick reply. I tried to concatanete the trajectory files
4 times. Three out of four try, I got same error massage.
But it worked for the last one.. It is a weird situation.. What could cause
this?

Turgay

2012/6/1 Justin A. Lemkul <jalemkul at vt.edu>

>
>
> On 6/1/12 8:02 AM, Turgay Cakmak wrote:
>
>> Hi gromacs users,
>> I concatenated 7 trajectory files (each one has 10ns simulation) using
>> "trajcat". Then, when I used "gmxcheck", I get following error.
>> Reading frame       0 time    0.000
>> # Atoms  68393
>> Precision 0.001 (nm)
>> Reading frame   13000 time 26000.000
>> *WARNING: Incomplete frame: nr 13739 time 27478
>>
>> *
>> But, when I check the non-concatenated files with gmxcheck, I didn't get
>> any
>> problem..
>> I am so confused. Any suggestion will be really appreciated...
>>
>
> Try the concatenation again.  Perhaps a filesystem blip caused an
> incomplete frame to be written.
>
> -Justin
>
> --
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> Department of Biochemistry
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