[gmx-users] dodssp segmentation fault

Denis Kazakiewicz d.kazakiewicz at gmail.com
Thu Jun 14 11:59:20 CEST 2012


Hello
Dear Gromacs users.
This is many times discussed issue, however nothing seems to work so far

do_dssp returns "Segmentation fault"

It is the oldest version of dssp: dsspcmbi
Gromacs 4.5.5 on Debian i386
I did use export DSSP=/path to dssp

1. What is possibly could be?
2. Any other efficient ways of analyzing secondary structure without 
do_dssp (with VMD, may be)?

THANKS in advance



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