[gmx-users] dodssp segmentation fault

Denis Kazakiewicz d.kazakiewicz at gmail.com
Thu Jun 14 11:59:20 CEST 2012

Dear Gromacs users.
This is many times discussed issue, however nothing seems to work so far

do_dssp returns "Segmentation fault"

It is the oldest version of dssp: dsspcmbi
Gromacs 4.5.5 on Debian i386
I did use export DSSP=/path to dssp

1. What is possibly could be?
2. Any other efficient ways of analyzing secondary structure without 
do_dssp (with VMD, may be)?

THANKS in advance

More information about the gromacs.org_gmx-users mailing list