[gmx-users] dodssp segmentation fault SOLVED for DEBIAN

[Denis Kazakiewicz]

Wow, just did that.
In Debian have to use 4.5.5-2 version of Gromacs from sid repository.
Still have to use the oldest dssp
http://swift.cmbi.ru.nl/gv/dssp/HTML/dsspcmbi

It was simply Gromacs issue with no ways around.
  And it woks:)

Just wondering,
  What are other efficient ways of analyzing secondary structure instead 
of dssp? (novice question)
Good luck to everybody


On 14.06.2012 11:59, Denis Kazakiewicz wrote:
> Hello
> Dear Gromacs users.
> This is many times discussed issue, however nothing seems to work so far
>
> do_dssp returns "Segmentation fault"
>
> It is the oldest version of dssp: dsspcmbi
> Gromacs 4.5.5 on Debian i386
> I did use export DSSP=/path to dssp
>
> 1. What is possibly could be?
> 2. Any other efficient ways of analyzing secondary structure without 
> do_dssp (with VMD, may be)?
>
> THANKS in advance