[gmx-users] mdrun -v output

Javier Cerezo jcb1 at um.es
Mon Jun 18 09:13:42 CEST 2012

Information messages, such as those shown on the screen during mdrun are 
output to stderr. So if you want to get them you should redirect as follows:

mdrun -v -s md.tpr 2> verbose.txt

In the case where you may need to get all output (from both stdout and 
stderr) you should use:

mdrun -v -s md.tpr &> verbose.txt


El 18/06/12 08:49, Chandan Choudhury escribió:
> Dear gmx users,
> Is it possible to redirect the output of mdrun -v to a file while 
> submitting the job using pbs script?
>  mdrun -v -s md.tpr > verbose.txt
> donot produce output (to file verbose.txt) while the job is running.
> Chandan
> --
> Chandan kumar Choudhury
> NCL, Pune

PhD Student
Physical Chemistry
Universidad de Murcia
Murcia (Spain)
Tel: (+34)868887434
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