[gmx-users] mdrun -v output

[Chandan Choudhury]

Thanks Peter for the clarification.

Chandan

--
Chandan kumar Choudhury
NCL, Pune
INDIA


On Tue, Jun 19, 2012 at 2:27 AM, Peter C. Lai <pcl at uab.edu> wrote:

> It actually depends on your shell/environment :-P
>
> On sun grid engine and derivatives, the you can have the scheduler capture
> the stdout and stderr output through the -o and -e parameters,
> respectively.
>
> On 2012-06-18 05:28:11PM +0530, Chandan Choudhury wrote:
> > On Mon, Jun 18, 2012 at 12:43 PM, Javier Cerezo <jcb1 at um.es> wrote:
> >
> > >  Information messages, such as those shown on the screen during mdrun
> are
> > > output to stderr. So if you want to get them you should redirect as
> follows:
> > >
> > > mdrun -v -s md.tpr 2> verbose.txt
> > >
> > > In the case where you may need to get all output (from both stdout and
> > > stderr) you should use:
> > >
> > > mdrun -v -s md.tpr &> verbose.txt
> > >
> >
> > Thanks. It is actually  mdrun -v -s md.tpr >& verbose.txt
> >
> > >
> > > Javier
> > >
> > > El 18/06/12 08:49, Chandan Choudhury escribió:
> > >
> > >
> > > Dear gmx users,
> > >
> > > Is it possible to redirect the output of mdrun -v to a file while
> > > submitting the job using pbs script?
> > >  mdrun -v -s md.tpr > verbose.txt
> > > donot produce output (to file verbose.txt) while the job is running.
> > >
> > > Chandan
> > >
> > > --
> > > Chandan kumar Choudhury
> > > NCL, Pune
> > > INDIA
> > >
> > >
> > >
> > > --
> > > Javier CEREZO BASTIDA
> > > PhD Student
> > > Physical Chemistry
> > > Universidad de Murcia
> > > Murcia (Spain)
> > > Tel: (+34)868887434
> > >
> > > --
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> Peter C. Lai                    | University of Alabama-Birmingham
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