[gmx-users] mdrun -v output
Peter C. Lai
pcl at uab.edu
Mon Jun 18 22:57:35 CEST 2012
It actually depends on your shell/environment :-P
On sun grid engine and derivatives, the you can have the scheduler capture
the stdout and stderr output through the -o and -e parameters, respectively.
On 2012-06-18 05:28:11PM +0530, Chandan Choudhury wrote:
> On Mon, Jun 18, 2012 at 12:43 PM, Javier Cerezo <jcb1 at um.es> wrote:
> > Information messages, such as those shown on the screen during mdrun are
> > output to stderr. So if you want to get them you should redirect as follows:
> > mdrun -v -s md.tpr 2> verbose.txt
> > In the case where you may need to get all output (from both stdout and
> > stderr) you should use:
> > mdrun -v -s md.tpr &> verbose.txt
> Thanks. It is actually mdrun -v -s md.tpr >& verbose.txt
> > Javier
> > El 18/06/12 08:49, Chandan Choudhury escribió:
> > Dear gmx users,
> > Is it possible to redirect the output of mdrun -v to a file while
> > submitting the job using pbs script?
> > mdrun -v -s md.tpr > verbose.txt
> > donot produce output (to file verbose.txt) while the job is running.
> > Chandan
> > --
> > Chandan kumar Choudhury
> > NCL, Pune
> > INDIA
> > --
> > Javier CEREZO BASTIDA
> > PhD Student
> > Physical Chemistry
> > Universidad de Murcia
> > Murcia (Spain)
> > Tel: (+34)868887434
> > --
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Peter C. Lai | University of Alabama-Birmingham
Programmer/Analyst | KAUL 752A
Genetics, Div. of Research | 705 South 20th Street
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