[gmx-users] H-atoms in .hdb file

[Justin A. Lemkul]

On 6/27/12 3:38 AM, Shima Arasteh wrote:
>
>
> As Justin suggested me, I added the FOR residue to the .rtp file of FF and then added the FOR as a protein in residuetypes.dat . FOR is the first residue in protein chain. I chose none as the N-terminus . But after processing the .pdb file the FOR is identified itself but "not" identified as protein.
>

How so?  What line did you add to residuetypes.dat, and what was the exact 
problematic output of pdb2gmx?

-Justin

-- 
========================================

Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================