[gmx-users] -p topol.top input/output error

Mark Abraham Mark.Abraham at anu.edu.au
Fri Mar 9 13:31:15 CET 2012

On 9/03/2012 11:24 PM, Dialing Pretty wrote:
> Hi Mark, iy says
> "Program genbox, VERSION 4.0.5
> Source code file: futil.c, line: 330
> File input/output error:
> fan1.top"
> And there is no indication early steps failure.
> Any suggestions?

Either the tutorial is wrong (and you just happen to be the first to 
notice), or you've done something wrong, such as working in a directory 
where you cannot create files. There's lots of possibilities, however.


> Dialing
> *From:* Mark Abraham <Mark.Abraham at anu.edu.au>
> *To:* Discussion list for GROMACS users <gmx-users at gromacs.org>
> *Sent:* Friday, 9 March 2012 10:18 PM
> *Subject:* Re: [gmx-users] -p topol.top input/output error
> On 9/03/2012 10:52 PM, Dialing Pretty wrote:
>> Dear All,
>> When I use gromacs 4.0.5 practice the on-line tutorial on lysozyme, for
>> genbox -cp 1AKI_newbox.gro -cs spc216.gro -o 1AKI_solv.gro -p topol.top,
>> the output says
>> File input/output error:
>> topol.top
>> Will you please give me some suggestions on how to solve the problem?
> This file should exist. It doesn't. Presumably some previous step failed.
> Mark
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