[gmx-users] -p topol.top input/output error

[Dialing Pretty]

In that directory I have created some other files by the gromacs command, but fail to on the top file. I will find the reason.
 
 

________________________________
 From: Mark Abraham <Mark.Abraham at anu.edu.au>
To: 
Cc: Discussion list for GROMACS users <gmx-users at gromacs.org> 
Sent: Friday, 9 March 2012 10:31 PM
Subject: Re: [gmx-users] -p topol.top input/output error
  

On 9/03/2012 11:24 PM, Dialing Pretty wrote: 
Hi Mark, iy says 
>"Program genbox, VERSION 4.0.5  
>Source code file: futil.c, line: 330  
>File input/output error:  
>fan1.top" 
>  
>And there is no indication early steps failure. 
>  
>Any suggestions?   
Either the tutorial is wrong (and you just happen to be the first to
    notice), or you've done something wrong, such as working in a
    directory where you cannot create files. There's lots of
    possibilities, however.

Mark


  
>Dialing 
>
> 
>From: Mark Abraham <Mark.Abraham at anu.edu.au>
>To: Discussion list for GROMACS users <gmx-users at gromacs.org> 
>Sent: Friday, 9 March 2012 10:18 PM
>Subject: Re: [gmx-users] -p topol.top input/output error
>  
>
>On 9/03/2012 10:52 PM, Dialing Pretty wrote: 
>Dear All, 
>>  
>>When I use gromacs 4.0.5 practice the on-line tutorial on lysozyme, for 
>>genbox -cp 1AKI_newbox.gro -cs spc216.gro -o 1AKI_solv.gro -p topol.top, 
>>  
>>the output says File input/output error:
>>topol.top 
>>Will you please give me some suggestions on how to solve the problem?   
>This file should exist. It doesn't. Presumably some
                previous step failed.
>
>Mark
>  
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