[gmx-users] gromacs 4.5.5 cygwin installation error message

[Wholly Peach]

Hi Mark,
 
If for Gromacs I use disable --disable-threads, for fftw3 show I also use --disable-threads?
 
Wholley
 

________________________________
 From: Mark Abraham <Mark.Abraham at anu.edu.au>
To: Discussion list for GROMACS users <gmx-users at gromacs.org> 
Sent: Sunday, 11 March 2012 11:43 AM
Subject: Re: [gmx-users] gromacs 4.5.5 cygwin installation error message
  
On 11/03/2012 12:20 PM, Peter C. Lai wrote:
> Is fftw3 properly installed in /usr/local/lib?

And of the right precision, like reading the installation guides will warn you...

Mark

> 
> On 2012-03-10 03:51:12PM -0800, Wholly Peach wrote:
>>     Dear All,
>>   For Gromacs installation, my configure command is:
>>   ./configure --enable-shared LDFLAGS='-L/usr/local/lib' --disable-threads.
>> After make, the error message is as following.
>> I am looking forward to getting a reply from you on how to avoid the error message.
>> Wholly
>>     .....
>> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bb5): undefined reference to `_fftwf_destroy_plan'
>> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bcb): undefined reference to `_fftwf_destroy_plan'
>> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2be1): undefined reference to `_fftwf_destroy_plan'
>> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bf7): more undefined references to `_fftwf_destroy_plan' follow
>> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2c37): undefined reference to `_fftwf_free'
>> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2d17): undefined reference to `_fftwf_free'
>> collect2: ld returned 1 exit status
>> Makefile:387: recipe for target `libmd.la' failed
>> make[3]: *** [libmd.la] Error 1
>> make[3]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src/mdlib'
>> Makefile:302: recipe for target `all-recursive' failed
>> make[2]: *** [all-recursive] Error 1
>> make[2]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'
>> Makefile:238: recipe for target `all' failed
>> make[1]: *** [all] Error 2
>> make[1]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'
>> Makefile:347: recipe for target `all-recursive' failed
>> make: *** [all-recursive] Error 1
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