[gmx-users] gromacs 4.5.5 cygwin installation error message

[Peter C. Lai]

I don't think fftw3 has that option, since disable-threads pertains to
mdrun parallelization (forces MPI-only, basically).

On 2012-03-10 05:50:19PM -0800, Wholly Peach wrote:
> Hi Mark,
>  
> If for Gromacs I use disable --disable-threads, for fftw3 show I also use --disable-threads?
>  
> Wholley
>  
> 
> ________________________________
>  From: Mark Abraham <Mark.Abraham at anu.edu.au>
> To: Discussion list for GROMACS users <gmx-users at gromacs.org> 
> Sent: Sunday, 11 March 2012 11:43 AM
> Subject: Re: [gmx-users] gromacs 4.5.5 cygwin installation error message
>   
> On 11/03/2012 12:20 PM, Peter C. Lai wrote:
> > Is fftw3 properly installed in /usr/local/lib?
> 
> And of the right precision, like reading the installation guides will warn you...
> 
> Mark
> 
> > 
> > On 2012-03-10 03:51:12PM -0800, Wholly Peach wrote:
> >>     Dear All,
> >>   For Gromacs installation, my configure command is:
> >>   ./configure --enable-shared LDFLAGS='-L/usr/local/lib' --disable-threads.
> >> After make, the error message is as following.
> >> I am looking forward to getting a reply from you on how to avoid the error message.
> >> Wholly
> >>     .....
> >> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bb5): undefined reference to `_fftwf_destroy_plan'
> >> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bcb): undefined reference to `_fftwf_destroy_plan'
> >> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2be1): undefined reference to `_fftwf_destroy_plan'
> >> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bf7): more undefined references to `_fftwf_destroy_plan' follow
> >> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2c37): undefined reference to `_fftwf_free'
> >> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2d17): undefined reference to `_fftwf_free'
> >> collect2: ld returned 1 exit status
> >> Makefile:387: recipe for target `libmd.la' failed
> >> make[3]: *** [libmd.la] Error 1
> >> make[3]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src/mdlib'
> >> Makefile:302: recipe for target `all-recursive' failed
> >> make[2]: *** [all-recursive] Error 1
> >> make[2]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'
> >> Makefile:238: recipe for target `all' failed
> >> make[1]: *** [all] Error 2
> >> make[1]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'
> >> Makefile:347: recipe for target `all-recursive' failed
> >> make: *** [all-recursive] Error 1
> >> -- gmx-users mailing list    gmx-users at gromacs.org
> >> http://lists.gromacs.org/mailman/listinfo/gmx-users
> >> Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> >> Please don't post (un)subscribe requests to the list. Use the
> >> www interface or send it to gmx-users-request at gromacs.org.
> >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> > 
> 
> -- gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

> -- 
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists


-- 
==================================================================
Peter C. Lai			| University of Alabama-Birmingham
Programmer/Analyst		| KAUL 752A
Genetics, Div. of Research	| 705 South 20th Street
pcl at uab.edu			| Birmingham AL 35294-4461
(205) 690-0808			|
==================================================================