[gmx-users] Generating topology
Mark.Abraham at anu.edu.au
Thu Mar 22 06:15:37 CET 2012
On 22/03/2012 2:54 PM, Spring buds wrote:
> A protein sits on the top of another protein (not docking). I then
> used pdb2gmx command to generate the topology. Surprisingly, i got
> five files, as given below: I think the two proteins are not
> connected each other. is it possible to make it one posre and topol file.
Yes, see discussion in pdb2gmx -h. (Checking -h should always been a
first place to look for information)
> Many thanks in advance
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