[gmx-users] pdb2gmx input file error

Mark Abraham Mark.Abraham at anu.edu.au
Thu Mar 22 12:12:06 CET 2012

On 22/03/2012 6:15 PM, Acoot Brett wrote:
> Dear All,
> The problem has been solved.
> When I cp the pdb file from another folder to the gromacs running 
> folder, I find the pdb file in the gromacs running folder was not 
> permitted to open, even by "vi"..
> Then in the normal Windows system I copy the pdb file in its original 
> folder and paste it into the gromacs running folder, in cygwin gromcas 
> the pab can be read (or can be open by vi).
> But there is still ununderstandable why by cp the pdb file is not 
> permitted to open.

Sounds like you have done something inappropriate with file and/or 
directory permissions, perhaps by changing which Windows user did what 
at which time. It's not a GROMACS problem, anyway.

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