[gmx-users] how to extract trajectories into individual pdb file?

[Justin A. Lemkul]

On 5/3/12 11:58 AM, Albert wrote:
> thank you very much.
>
> I found a problem : there is no option to select step. eg:
>   I would like to export one snapshot at each 10ps, I don't find such kind of
> options......
>

That's what you can use -skip or -dt for.  Alternatively, dump out frames at 
specific times with -dump.  Note that you can find all of this, and more, in the 
help info printed by trjconv, as Mark originally suggested.

-Justin

> THX
>
> On 05/03/2012 05:21 PM, francesco oteri wrote:
>> -fit
>>
>> 2012/5/3 Albert <mailmd2011 at gmail.com <mailto:mailmd2011 at gmail.com>>
>>
>>     On 05/03/2012 05:12 PM, francesco oteri wrote:
>>>     In particular, look at the option -sep
>>
>>
>>     thank you for kind reply. but how to superimposed the left snapshot with
>>     the first one?
>>
>>     thanks again for helps
>>
>>     --
>>     gmx-users mailing list gmx-users at gromacs.org <mailto:gmx-users at gromacs.org>
>>     http://lists.gromacs.org/mailman/listinfo/gmx-users
>>     Please search the archive at
>>     http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
>>     Please don't post (un)subscribe requests to the list. Use the
>>     www interface or send it to gmx-users-request at gromacs.org
>>     <mailto:gmx-users-request at gromacs.org>.
>>     Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>>
>>
>>
>>
>> --
>> Cordiali saluti, Dr.Oteri Francesco
>>
>>
>
>
>

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================