May 2012 Archives by date
Starting: Tue May 1 01:46:42 CEST 2012
Ending: Thu May 31 21:58:26 CEST 2012
Messages: 1036
- [gmx-users] NBFIX to gromacs
Peter C. Lai
- [gmx-users] Box of water
cuong nguyen
- [gmx-users] Box of water
Justin A. Lemkul
- [gmx-users] Box of water
Mark Abraham
- [gmx-users] Box of water
cuong nguyen
- [gmx-users] Box of water
Dallas Warren
- [gmx-users] Box of water
Mark Abraham
- [gmx-users] Error in using gromacs for MD simulation
Dallas Warren
- [gmx-users] How to create a gmx topology for a polysaccharide using glycam 06?
Davide Mercadante
- [gmx-users] disre and posres together?
Banafsheh Mehrazma
- [gmx-users] Re: CO2/gromos53a5
Junfang.Zhang at csiro.au
- [gmx-users] A problem with gromacs versions
Shima Arasteh
- [gmx-users] A problem with gromacs versions
Mark Abraham
- [gmx-users] A problem with gromacs versions
Shima Arasteh
- [gmx-users] disre and posres together?
Justin A. Lemkul
- [gmx-users] segmentation fault during equilibration
niaz poorgholami
- [gmx-users] POPC: ff53a6 and CHARMM36 formats
Anirban Ghosh
- [gmx-users] POPC: ff53a6 and CHARMM36 formats
Ángel Piñeiro
- [gmx-users] GROMOS87 and CHARMM27
Shima Arasteh
- [gmx-users] POPC: ff53a6 and CHARMM36 formats
Justin A. Lemkul
- [gmx-users] segmentation fault during equilibration
Justin A. Lemkul
- [gmx-users] minimum distance between periodic images does not aggree with box dimensions
Tsjerk Wassenaar
- [gmx-users] saltbridges newbie question
Denis Kazakiewicz
- [gmx-users] disre and posres together?
Mark Abraham
- [gmx-users] saltbridges newbie question
Peter C. Lai
- [gmx-users] saltbridges newbie question
Denis Kazakiewicz
- Fw: [gmx-users] GROMOS87 and CHARMM27
Shima Arasteh
- [gmx-users] segmentation fault during equilibration
niaz poorgholami
- Fw: [gmx-users] GROMOS87 and CHARMM27
Justin A. Lemkul
- [gmx-users] segmentation fault during equilibration
Justin A. Lemkul
- [gmx-users] Re: gmx-users Digest, Vol 97, Issue 6
niaz poorgholami
- [gmx-users] File editing - only one layer of water around a molecule (again)
Lara Bunte
- [gmx-users] File editing - only one layer of water around a molecule
Lara Bunte
- [gmx-users] segmentation fault during equilibration
niaz poorgholami
- [gmx-users] File editing - only one layer of water around a molecule
Justin A. Lemkul
- [gmx-users] segmentation fault during equilibration
Justin A. Lemkul
- [gmx-users] Gromacs Parrallal run
Dharmendra Verma
- [gmx-users] File editing - only one layer of water around a molecule
Lara Bunte
- [gmx-users] File editing - only one layer of water around a molecule
Justin A. Lemkul
- [gmx-users] RE: Re: CO2/gromos53a5
Dallas Warren
- [gmx-users] RE: Regarding errors
Dallas Warren
- [gmx-users] implicit solvent model for GROMOS force field
Man Hoang Viet
- [gmx-users] GROMOS87 and CHARMM27
Shima Arasteh
- [gmx-users] POPC: ff53a6 and CHARMM36 formats
Anirban Ghosh
- [gmx-users] To know
Anik Sen
- [gmx-users] To know
Mark Abraham
- [gmx-users] To know
Mark Abraham
- [gmx-users] Automation of selecting water around a molecule
Lara Bunte
- [gmx-users] some hardware questions
melichercik
- [gmx-users] File editing - only one layer of water around a molecule
Teemu Murtola
- [gmx-users] some hardware questions
Thomas Evangelidis
- [gmx-users] Re: Re: g_wham problem with negative COM differences
Anni Kauko
- [gmx-users] How to remove H atom from residue in gro file?
Hagit G
- [gmx-users] Number of coordinate in topol.top and solv.gro not matching
Sangita Kachhap
- [gmx-users] CHARMM36 format POPC
Anirban Ghosh
- [gmx-users] Question about tabulated potentials
Marcelo Lopez
- [gmx-users] GROMOS87 and CHARMM27
Justin A. Lemkul
- [gmx-users] Re: Re: g_wham problem with negative COM differences
Justin A. Lemkul
- [gmx-users] How to remove H atom from residue in gro file?
Justin A. Lemkul
- [gmx-users] How to remove H atom from residue in gro file?
Mark Abraham
- [gmx-users] Number of coordinate in topol.top and solv.gro not matching
Justin A. Lemkul
- [gmx-users] Automation of selecting water around a molecule
Mark Abraham
- [gmx-users] GROMOS87 and CHARMM27
Justin A. Lemkul
- [gmx-users] سلام استاد
Shima Arasteh
- [gmx-users] The wrong email, Sorry
Shima Arasteh
- [gmx-users] GROMOS87 and CHARMM27
Shima Arasteh
- Re: [gmx-users] سلام استاد
leila separdar
- [gmx-users] some hardware questions
Peter C. Lai
- [gmx-users] CHARMM36 format POPC
Peter C. Lai
- [gmx-users] some hardware questions
Mirco Wahab
- [gmx-users] some hardware questions
Peter C. Lai
- [gmx-users] Number of cooredinate in topol.top and solv.gro not matching
Sangita Kachhap
- [gmx-users] doubt about OpenMM
Martin Hoefling
- [gmx-users] doubt about OpenMM
Thales Kronenberger
- [gmx-users] pullf.xvg
Krzysztof Kuczera
- [gmx-users] Pull code for Constraint
xu zhijun
- [gmx-users] Number of cooredinate in topol.top and solv.gro not matching
Justin A. Lemkul
- [gmx-users] pullf.xvg
Marzinek, Jan
- [gmx-users] Pull direction is always outward
cescoxonta
- [gmx-users] NBFIX to gromacs
Ricardo O. S. Soares
- [gmx-users] Re: Pull code for Constraint
cescoxonta
- [gmx-users] NBFIX to gromacs
Peter C. Lai
- [gmx-users] trjconv correct the pbc before analysis
mu xiaojia
- [gmx-users] trjconv correct the pbc before analysis
Justin A. Lemkul
- [gmx-users] trjconv correct the pbc before analysis
Mark Abraham
- [gmx-users] Nubmer of coordinate not matching in topol.top and sol.gro
Sangita Kachhap
- [gmx-users] CHARMM36 format POPC
Anirban Ghosh
- [gmx-users] a question about ensemble
Albert
- [gmx-users] a question about ensemble
Dommert Florian
- [gmx-users] a question about ensemble
Albert
- [gmx-users] a question about ensemble
francesco oteri
- [gmx-users] a question about ensemble
Dommert Florian
- [gmx-users] a question about ensemble
Dommert Florian
- [gmx-users] a question about ensemble
francesco oteri
- [gmx-users] How to remove H atom from residue in gro file?
Hagit G
- [gmx-users] Incorrect number of parameters
Steven Neumann
- [gmx-users] a question about ensemble
Dommert Florian
- [gmx-users] Re: Re: Re: g_wham problem with negative COM differences
Anni Kauko
- [gmx-users] Proper 1-octanol box preparation
Ondrej Kroutil
- [gmx-users] membrane simulation
scaprari at uniroma3.it
- [gmx-users] membrane simulation
Anirban Ghosh
- [gmx-users] jointly-couple lipids to theromstat - MARTINI force-field
Weingarth, M.H.
- [gmx-users] jointly-couple lipids to theromstat - MARTINI force-field
Anirban Ghosh
- AW: [gmx-users] membrane simulation
Rausch, Felix
- [gmx-users] Re: Proper 1-octanol box preparation
Thomas Schlesier
- [gmx-users] jointly-couple lipids to theromstat - MARTINI force-field
XAvier Periole
- [gmx-users] CHARMM36 and Dispersion correction
Anirban Ghosh
- [gmx-users] missing gbsa parameters
Vedat Durmaz
- [gmx-users] missing gbsa parameters
Justin A. Lemkul
- [gmx-users] membrane simulation
scaprari at uniroma3.it
- [gmx-users] membrane simulation
Justin A. Lemkul
- [gmx-users] Lamb-Protein
francesco oteri
- [gmx-users] Lamb-Protein
Justin A. Lemkul
- [gmx-users] Lamb-Protein
francesco oteri
- [gmx-users] how to extract trajectories into individual pdb file?
Albert
- [gmx-users] how to extract trajectories into individual pdb file?
Mark Abraham
- [gmx-users] how to extract trajectories into individual pdb file?
francesco oteri
- [gmx-users] how to extract trajectories into individual pdb file?
Albert
- [gmx-users] how to extract trajectories into individual pdb file?
francesco oteri
- [gmx-users] Lamb-Protein
Justin A. Lemkul
- [gmx-users] how to extract trajectories into individual pdb file?
Albert
- [gmx-users] how to extract trajectories into individual pdb file?
Justin A. Lemkul
- [gmx-users] Error: 1 atoms are not part of any of the T-Coupling groups
kalai arasan
- [gmx-users] Error: 1 atoms are not part of any of the T-Coupling groups
Justin A. Lemkul
- [gmx-users] a question about ensemble
Patrick Fuchs
- [gmx-users] CHARMM36 and Dispersion correction
Peter C. Lai
- [gmx-users] trjconv correct the pbc before analysis
mu xiaojia
- [gmx-users] NBFIX to gromacs
Ricardo O. S. Soares
- [gmx-users] Re: Proper 1-octanol box preparation
Dr. Vitaly V. Chaban
- [gmx-users] Proper 1-octanol box preparation
Dallas Warren
- [gmx-users] trjconv correct the pbc before analysis
Mark Abraham
- [gmx-users] Incorrect number of parameters
Mark Abraham
- [gmx-users] any method to determine gaussian curvature of phase
Sanku M
- [gmx-users] Wildcard atomtypes-regd
ramesh cheerla
- [gmx-users] Proper 1-octanol box preparation
David van der Spoel
- [gmx-users] a question about ensemble
Dommert Florian
- [gmx-users] a question about ensemble
Erik Marklund
- [gmx-users] missing gbsa parameters
Alan
- [gmx-users] a question about ensemble
Dommert Florian
- Re: [gmx-users] سلام استاد
Hengameh Fallah
- [gmx-users] سلام استاد
Dommert Florian
- [gmx-users] missing gbsa parameters
Vedat Durmaz
- [gmx-users] missing gbsa parameters
Justin A. Lemkul
- [gmx-users] How to construct 1-4 interaction tables for -tablep in mdrun?
Marcelo Lopez
- [gmx-users] missing gbsa parameters
Vedat Durmaz
- [gmx-users] missing gbsa parameters
Justin A. Lemkul
- [gmx-users] missing gbsa parameters
Alan
- [gmx-users] choose a force field
Shima Arasteh
- [gmx-users] pdb2gmx angles and dihedrals
Elton Carvalho
- [gmx-users] choose a force field
Justin A. Lemkul
- [gmx-users] missing gbsa parameters
Vedat Durmaz
- [gmx-users] some hardware questions
Oliver Stueker
- [gmx-users] Help with free energy
Milinda Samaraweera
- [gmx-users] Help with free energy
Justin A. Lemkul
- [gmx-users] Gromacs 4.6 with CUDA 4.2
Roland Schulz
- [gmx-users] Help with free energy
Justin A. Lemkul
- [gmx-users] pdb2gmx angles and dihedrals
Mark Abraham
- [gmx-users] Justin-lipid tutorial...
rama david
- [gmx-users] Help with free energy
Emanuel Birru
- [gmx-users] Justin-lipid tutorial..
rama david
- [gmx-users] a question about ensemble
Patrick Fuchs
- [gmx-users] a question about ensemble
Dommert Florian
- [gmx-users] Topology parameters
Shima Arasteh
- [gmx-users] choose a force field
Justin A. Lemkul
- [gmx-users] Justin-lipid tutorial...
Justin A. Lemkul
- [gmx-users] Justin-lipid tutorial..
Justin A. Lemkul
- [gmx-users] Topology parameters
Justin A. Lemkul
- [gmx-users] How to build 1-4 pairs tables for -tablep in mdrun?
Marcelo Lopez
- [gmx-users] How to build 1-4 pairs tables for -tablep in mdrun?
Justin A. Lemkul
- [gmx-users] Topology parameters
Shima Arasteh
- [gmx-users] Topology parameters
Justin A. Lemkul
- [gmx-users] how to use the triplets index file generated by g_hbond
Yun Shi
- [gmx-users] keep the nanotube cylindrical.
Za Pour
- [gmx-users] how to use the triplets index file generated by g_hbond
Justin A. Lemkul
- [gmx-users] keep the nanotube cylindrical.
Justin A. Lemkul
- [gmx-users] a question about ensemble
baptista at itqb.unl.pt
- [gmx-users] Determining which parallelization algorithm I used
Andrew DeYoung
- [gmx-users] Determining which parallelization algorithm I used
Justin A. Lemkul
- [gmx-users] Glutamate Chi1 Dihedral Not Symmetrical?
Sai Kumar Ramadugu
- [gmx-users] Chelation of Calcium with Citrate
Nancy
- [gmx-users] Determining which parallelization algorithm I used
Mark Abraham
- [gmx-users] Glutamate Chi1 Dihedral Not Symmetrical?
Mark Abraham
- [gmx-users] How to build 1-4 pairs tables for -tablep in mdrun?
Mark Abraham
- [gmx-users] how to keep nanotube cylindrical
Za Pour
- [gmx-users] how to keep nanotube cylindrical
Justin A. Lemkul
- [gmx-users] the radius of dry core
dina dusti
- [gmx-users] Problem in GROMACS installation
amit banerjee
- [gmx-users] Problem in GROMACS installation
Mark Abraham
- [gmx-users] Positive potential energies for Dimethyl Aniline and Aniline
Debayan Chakraborty
- [gmx-users] Topology parameters
Shima Arasteh
- [gmx-users] Positive potential energies for Dimethyl Aniline and Aniline
Justin A. Lemkul
- [gmx-users] Topology parameters
Justin A. Lemkul
- [gmx-users] Missing Interactions in [ angles ] Section in Topology
Lara Bunte
- [gmx-users] How to build 1-4 pairs tables for -tablep in mdrun?
Marcelo Lopez
- [gmx-users] Missing Interactions in [ angles ] Section in Topology
Justin A. Lemkul
- [gmx-users] the radius of dry core
Dallas Warren
- [gmx-users] How to build 1-4 pairs tables for -tablep in mdrun?
Mark Abraham
- [gmx-users] Positive potential energies for Dimethyl Aniline and Aniline
Debayan Chakraborty
- [gmx-users] Topology parameters
Shima Arasteh
- [gmx-users] the radius of dry core
dina dusti
- [gmx-users] the radius of dry core
Dallas Warren
- [gmx-users] Re: GPCR MD Tutorial Using GROMACS (URL)
Bala S
- [gmx-users] Cut off problem
Anik Sen
- [gmx-users] Re: GPCR MD Tutorial Using GROMACS (URL)
Anirban Ghosh
- [gmx-users] RE: Cut off problem
Dallas Warren
- [gmx-users] the radius of dry core
dina dusti
- [gmx-users] error estimate
dina dusti
- Fwd: [gmx-users] How to build 1-4 pairs tables for -tablep in mdrun?
Marcelo Lopez
- [gmx-users] itp file problem
Sarath Kumar Baskaran
- [gmx-users] itp file problem
Anirban Ghosh
- [gmx-users] Positive potential energies for Dimethyl Aniline and Aniline
Justin A. Lemkul
- [gmx-users] Re: GPCR MD Tutorial Using GROMACS (URL)
Justin A. Lemkul
- [gmx-users] itp file problem
Justin A. Lemkul
- [gmx-users] How to build 1-4 pairs tables for -tablep in mdrun?
Broadbent, Richard
- [gmx-users] Fwd: HEME-cysteine gromacs simulation
Mark Abraham
- [gmx-users] Calculation of the components of (ionic) current using g_current
Andrew DeYoung
- [gmx-users] Calculation of the components of (ionic) current using g_current
Dommert Florian
- [gmx-users] ngmx
mohammad agha
- [gmx-users] ngmx
Justin A. Lemkul
- [gmx-users] Missing Interactions in [ angles ] Section in Topology
Lara Bunte
- [gmx-users] Missing Interactions in [ angles ] Section in Topology
Justin A. Lemkul
- [gmx-users] pdb2gmx angles and dihedrals
Elton Carvalho
- [gmx-users] citation for pdb2gmx -vsite hydrogens
Christopher Neale
- [gmx-users] some hardware questions
Szilárd Páll
- [gmx-users] some hardware questions
Szilárd Páll
- [gmx-users] some hardware questions
Szilárd Páll
- [gmx-users] some hardware questions
Szilárd Páll
- [gmx-users] some hardware questions
Szilárd Páll
- [gmx-users] Gromacs 4.6 with CUDA 4.2
Szilárd Páll
- [gmx-users] pdb2gmx angles and dihedrals
Mark Abraham
- [gmx-users] Getting local pressure
cuong nguyen
- [gmx-users] ngmx
mohammad agha
- [gmx-users] ngmx
Justin A. Lemkul
- [gmx-users] ngmx
mohammad agha
- [gmx-users] citation for pdb2gmx -vsite hydrogens
Erik Marklund
- [gmx-users] Re: Justin lipid-position restraine
rama david
- [gmx-users] Getting local pressure
Erik Marklund
- [gmx-users] Re: Justin lipid-position restraine
Anirban Ghosh
- [gmx-users] justin-lipid tutorial........
rama david
- [gmx-users] justin-lipid tutorial........
Justin A. Lemkul
- [gmx-users] Umbrella sampling PMF, drug and membrane with pull_geometry=cylinder
J B
- [gmx-users] Formyl parameters
Shima Arasteh
- [gmx-users] Formyl parameters
Justin A. Lemkul
- [gmx-users] restarting simulation after segmentation fault
Za Pour
- [gmx-users] restarting simulation after segmentation fault
Justin A. Lemkul
- [gmx-users] radius of gyration
dina dusti
- [gmx-users] radius of gyration
Justin A. Lemkul
- [gmx-users] Wild-card atomt types - regd
ramesh cheerla
- [gmx-users] Wild-card atomt types - regd
Justin A. Lemkul
- [gmx-users] (no subject)
Za Pour
- [gmx-users] Charge derrivation for OPLSAA forcefield
Milinda Samaraweera
- [gmx-users] (no subject)
Milinda Samaraweera
- [gmx-users] Slow-growth method question
Fabian Casteblanco
- [gmx-users] radius of gyration
dina dusti
- [gmx-users] radius of gyration
Justin A. Lemkul
- [gmx-users] radius of gyration
dina dusti
- [gmx-users] radius of gyration
Justin A. Lemkul
- [gmx-users] Formyl parameters
Peter C. Lai
- [gmx-users] system cooling down when runing NVE
Thanh Binh NGUYEN
- [gmx-users] system cooling down when runing NVE
Peter C. Lai
- [gmx-users] radius of gyration
dina dusti
- [gmx-users] Formyl parameters
Shima Arasteh
- [gmx-users] Calculation of solvent and solute relaxation times
Debayan Chakraborty
- [gmx-users] Re: Fwd: HEME-cysteine gromacs simulation
J Peterson
- [gmx-users] Itp file problem -- Atom type not found
Sarath Kumar Baskaran
- [gmx-users] Formyl parameters
Shima Arasteh
- [gmx-users] Formyl parameters
Shima Arasteh
- [gmx-users] AMBER heme parameters to simulate in GROMACS
J Peterson
- [gmx-users] system cooling down when runing NVE
Erik Marklund
- [gmx-users] Calculation of solvent and solute relaxation times
Erik Marklund
- [gmx-users] Test Particle Insertion of Water
Steven Neumann
- [gmx-users] Formyl parameters
Justin A. Lemkul
- [gmx-users] Itp file problem -- Atom type not found
Justin A. Lemkul
- [gmx-users] Go model -error in generating topology
mohan maruthi sena
- [gmx-users] Go model -error in generating topology
Justin A. Lemkul
- [gmx-users] Test Particle Insertion of Water
Javier Cerezo
- [gmx-users] Test Particle Insertion of Water
Steven Neumann
- [gmx-users] Bonds between planar group of atoms
Steven Neumann
- [gmx-users] pdb2gmx angles and dihedrals
Elton Carvalho
- [gmx-users] Test Particle Insertion of Water
Steven Neumann
- [gmx-users] Test Particle Insertion of Water
Javier Cerezo
- [gmx-users] Test Particle Insertion of Water
Steven Neumann
- [gmx-users] Test Particle Insertion of Water
Javier Cerezo
- [gmx-users] Formyl parameters
Shima Arasteh
- [gmx-users] Test Particle Insertion of Water
Steven Neumann
- [gmx-users] Formyl parameters
Justin A. Lemkul
- [gmx-users] Test Particle Insertion of Water
Steven Neumann
- [gmx-users] Test Particle Insertion of Water
Javier Cerezo
- [gmx-users] Test Particle Insertion of Water
Steven Neumann
- [gmx-users] Charge derrivation for OPLSAA forcefield
Dommert Florian
- [gmx-users] Restraining atoms
Steven Neumann
- [gmx-users] Restraining atoms
Justin A. Lemkul
- [gmx-users] genconf -trj?!?
Faezeh Kargar
- [gmx-users] genconf -trj?!?
Justin A. Lemkul
- [gmx-users] Free energy calculation about ions (hope Justin A. Lemkul can give some suggestions )
DeChang Li
- [gmx-users] Treating solute as a rigid body with flexible solvent molecules
Debayan Chakraborty
- [gmx-users] Treating solute as a rigid body with flexible solvent molecules
Mark Abraham
- [gmx-users] Free energy calculation about ions (hope Justin A. Lemkul can give some suggestions )
Justin A. Lemkul
- [gmx-users] Re: gmx-users Digest, Vol 97, Issue 69
farideh zergani
- [gmx-users] keep the nanotube cylindrical.
Elton Carvalho
- [gmx-users] poor performance in Hemiltonian Replica Exchange
francesco oteri
- [gmx-users] poor performance in Hemiltonian Replica Exchange
Michael Shirts
- [gmx-users] solvent group size (12548) is not a multiple of 3
Sangita Kachhap
- [gmx-users] rvdw and DispCorr
Bernhard Knapp
- [gmx-users] solvent group size (12548) is not a multiple of 3
Terry
- [gmx-users] line longer than 4095 - a bug?
Marzinek, Jan
- [gmx-users] rvdw and DispCorr
Dommert Florian
- [gmx-users] Martini mapping for fluorinated alkane
maria goranovic
- [gmx-users] solvent group size (12548) is not a multiple of 3
Sangita Kachhap
- [gmx-users] movement in 2 directions - remove one degree of freedom
Steven Neumann
- [gmx-users] movement in 2 directions - remove one degree of freedom
Erik Marklund
- [gmx-users] problem
Anik Sen
- [gmx-users] problem
Terry
- [gmx-users] problem
Richard Broadbent
- [gmx-users] Simulation of POPC in water using CHARMM27
Shima Arasteh
- [gmx-users] Create Bond between new residues
Steven Neumann
- [gmx-users] MPIRUN issue for CHARMM36 FF
Anirban
- [gmx-users] Create Bond between new residues
Richard Broadbent
- [gmx-users] Simulation of POPC in water using CHARMM27
Anirban
- [gmx-users] Simulation of POPC in water using CHARMM27
Anirban
- [gmx-users] Simulation of POPC in water using CHARMM27
Shima Arasteh
- [gmx-users] Simulation of POPC in water using CHARMM27
Shima Arasteh
- [gmx-users] Create Bond between new residues
Steven Neumann
- [gmx-users] g_mdmat
francesca vitalini
- [gmx-users] Simulation of POPC in water using CHARMM27
Shima Arasteh
- [gmx-users] Simulation of POPC in water using CHARMM27
Anirban
- [gmx-users] Simulation of POPC in water using CHARMM27
Shima Arasteh
- [gmx-users] movement in 2 directions - remove one degree of freedom
Oliver Stueker
- [gmx-users] General amber force field in GROMACS
Milinda Samaraweera
- [gmx-users] General amber force field in GROMACS
Justin A. Lemkul
- [gmx-users] Number of native contacts rho
Sanku M
- [gmx-users] editconf and g_editconf confusion
Nitin Agrawal
- [gmx-users] editconf and g_editconf confusion
Justin A. Lemkul
- [gmx-users] editconf and g_editconf confusion
Nitin Agrawal
- [gmx-users] Simulation of POPC in water using CHARMM27
Shima Arasteh
- [gmx-users] Simulation of POPC in water using CHARMM27
Jesper Sørensen
- [gmx-users] Simulation of POPC in water using CHARMM27
Anirban
- [gmx-users] mdrun_mpi issue for CHARMM36 FF
Anirban
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Shima Arasteh
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Justin A. Lemkul
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Justin A. Lemkul
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Shima Arasteh
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Justin A. Lemkul
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Shima Arasteh
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Shima Arasteh
- [gmx-users] First Energy Minimization in a MD
Lara Bunte
- [gmx-users] First Energy Minimization in a MD
Justin A. Lemkul
- [gmx-users] *.ITP file
Kowsar Bagherzadeh
- [gmx-users] dipole moment
dina dusti
- [gmx-users] *.ITP file
Justin A. Lemkul
- [gmx-users] dipole moment
Justin A. Lemkul
- [gmx-users] dipole moment
dina dusti
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Shima Arasteh
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Justin A. Lemkul
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Shima Arasteh
- [gmx-users] How to get md_0_2. prefix for all output files during entexding production run, like got during first run md_0_1.
Sangita Kachhap
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Shima Arasteh
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Justin A. Lemkul
- [gmx-users] How to get md_0_2. prefix for all output files during entexding production run, like got during first run md_0_1.
Justin A. Lemkul
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Justin A. Lemkul
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Shima Arasteh
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Shima Arasteh
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Justin A. Lemkul
- [gmx-users] Should I use continuation = yes in my production dynamics following equilibration?
Andrew DeYoung
- [gmx-users] Should I use continuation = yes in my production dynamics following equilibration?
Justin A. Lemkul
- [gmx-users] Re: Should I use continuation = yes in my production dynamics following equilibration?
Andrew DeYoung
- [gmx-users] Re: Should I use continuation = yes in my production dynamics following equilibration?
Justin A. Lemkul
- [gmx-users] How to get md_0_2. prefix for all output files during entexding production run, like got during first run md_0_1.
Sangita Kachhap
- [gmx-users] User defined potential
mohan maruthi sena
- [gmx-users] mdrun_mpi issue with CHARMM36 FF
Anirban
- [gmx-users] User defined potential
Mark Abraham
- [gmx-users] mdrun_mpi issue with CHARMM36 FF
Mark Abraham
- [gmx-users] DSSP download,installation and dssp plot
bunty xy
- [gmx-users] DSSP download,installation and dssp plot
Mark Abraham
- [gmx-users] mdrun_mpi issue with CHARMM36 FF
Anirban
- [gmx-users] mdrun_mpi issue with CHARMM36 FF
Mark Abraham
- [gmx-users] line longer than 4095 - a bug?
Mark Abraham
- [gmx-users] Restart the Test Particle Insertion
Steven Neumann
- [gmx-users] dipole moment
XAvier Periole
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Shima Arasteh
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Mark Abraham
- [gmx-users] unsubcribes
Sanjoy Choudhury
- [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Shima Arasteh
- [gmx-users] index files for trjconv -sub
Fabian Paul
- Fw: [gmx-users] Fatal error: No atoms found in .rtp file in residue pairs
Shima Arasteh
- [gmx-users] Regarding errors
Seera Suryanarayana
- [gmx-users] doubts on gen-pairs
Bala subramanian
- [gmx-users] Regarding errors
Anik Sen
- [gmx-users] dipole moment
Dommert Florian
- [gmx-users] doubts on gen-pairs
Dommert Florian
- [gmx-users] dipole moment
XAvier Periole
- [gmx-users] dipole moment
Dommert Florian
- [gmx-users] Virtual Sites - remove from GRO
Steven Neumann
- [gmx-users] Virtual Sites - remove from GRO
Justin A. Lemkul
- [gmx-users] Virtual Sites - remove from GRO
Mark Abraham
- [gmx-users] Virtual Sites - remove from GRO
Steven Neumann
- [gmx-users] validation of a .rtp file
Shima Arasteh
- [gmx-users] fatal error: missing H atom in .pdb file
Shima Arasteh
- [gmx-users] Test Particle Insertion
Steven Neumann
- [gmx-users] Test Particle Insertion
Justin A. Lemkul
- [gmx-users] validation of a .rtp file
Justin A. Lemkul
- [gmx-users] fatal error: missing H atom in .pdb file
Justin A. Lemkul
- [gmx-users] fly some lipids to water
Dariush Mohammadyani
- [gmx-users] how to use the triplets index file generated by g_hbond
Yun Shi
- [gmx-users] Atom Names or Atom Types in the force field paramerization
Lara Bunte
- [gmx-users] how to use the triplets index file generated by g_hbond
Justin A. Lemkul
- [gmx-users] fly some lipids to water
Justin A. Lemkul
- [gmx-users] Atom Names or Atom Types in the force field paramerization
Justin A. Lemkul
- [gmx-users] Atom Names or Atom Types in the force field paramerization
Lara Bunte
- [gmx-users] Atom Names or Atom Types in the force field paramerization
Justin A. Lemkul
- [gmx-users] Question about drift in positions of frozen atoms
Andrew DeYoung
- [gmx-users] Atom Types in ffbonded.itp
Lara Bunte
- [gmx-users] Atom Types in ffbonded.itp
Justin A. Lemkul
- [gmx-users] Missing Interactions in [ angles ] Section in Topology
Lara Bunte
- [gmx-users] Missing Interactions in [ angles ] Section in Topology
Justin A. Lemkul
- [gmx-users] about the frame selection
rama david
- [gmx-users] about the frame selection
Anirban
- [gmx-users] about the frame selection
rama david
- [gmx-users] about the frame selection
Anirban
- [gmx-users] about the frame selection
rama david
- [gmx-users] Test Particle Insertion
Steven Neumann
- [gmx-users] NVT conserved-energy lysozyme
David de Sancho
- [gmx-users] ATB & SWISSPARAM Topologies
Anirban
- [gmx-users] Two [ dihedrals ] sections in topology
Lara Bunte
- [gmx-users] NVT conserved-energy lysozyme
Mark Abraham
- [gmx-users] ATB & SWISSPARAM Topologies
Justin A. Lemkul
- [gmx-users] NVT conserved-energy lysozyme
Dommert Florian
- [gmx-users] Two [ dihedrals ] sections in topology
Mark Abraham
- [gmx-users] Test Particle Insertion
Javier Cerezo
- [gmx-users] ATB & SWISSPARAM Topologies
Anirban
- [gmx-users] my e-mail to post in this list
carla.carluccio at unina.it
- [gmx-users] Problem in visualizing protein-ion complex trajectory in vmd
neeru sharma
- [gmx-users] about trifloroehanol
rama david
- [gmx-users] Problem in visualizing protein-ion complex trajectory in vmd
Mark Abraham
- [gmx-users] about trifloroehanol
Justin A. Lemkul
- [gmx-users] about trifloroehanol
rama david
- [gmx-users] DNA persistence length with g_polystat
Leandro
- [gmx-users] about trifloroehanol
rama david
- [gmx-users] about trifloroehanol
Justin A. Lemkul
- [gmx-users] parameters and restrains for Fe3+
Carla
- [gmx-users] about trifloroehanol
rama david
- [gmx-users] Generating_tpr_file from.xtc
shahid nayeem
- [gmx-users] Generating_tpr_file from.xtc
Justin A. Lemkul
- [gmx-users] Generating_tpr_file from.xtc
Tsjerk Wassenaar
- [gmx-users] Two [ dihedrals ] sections in topology
Lara Bunte
- [gmx-users] topology file in DPPC
scaprari at uniroma3.it
- [gmx-users] topology file in DPPC
Justin A. Lemkul
- [gmx-users] Two [ dihedrals ] sections in topology
Justin A. Lemkul
- [gmx-users] Two [ dihedrals ] sections in topology
Richard Broadbent
- [gmx-users] topology file in DPPC
scaprari at uniroma3.it
- [gmx-users] topology file in DPPC
Justin A. Lemkul
- [gmx-users] How to calculate the center of the mass in gromacs
xu zhijun
- [gmx-users] Re: NVT conserved-energy lysozyme
daviddesancho
- [gmx-users] itp file for flavins
vijaya subramanian
- [gmx-users] TFE Proper Dihedral types...
rama david
- [gmx-users] itp file for flavins
Justin A. Lemkul
- [gmx-users] How to calculate the center of the mass in gromacs
Justin A. Lemkul
- [gmx-users] TFE Proper Dihedral types...
Justin A. Lemkul
- [gmx-users] How to calculate the center of the mass in gromacs
xu zhijun
- [gmx-users] Questions about Thermostats
Lara Bunte
- [gmx-users] Measure angle with g_sgangle
Mast, Thilo
- [gmx-users] Two [ dihedrals ] sections in topology
Lara Bunte
- [gmx-users] Measure angle with g_sgangle
Justin A. Lemkul
- [gmx-users] Two [ dihedrals ] sections in topology
Justin A. Lemkul
- [gmx-users] itp file for flavins
Justin A. Lemkul
- [gmx-users] Two [ dihedrals ] sections in topology
Mark Abraham
- [gmx-users] What is the subroutine for SHAKE or RATTLE? Thanks.
kevin
- [gmx-users] TFE Proper Dihedral types...
rama david
- [gmx-users] Coupling groups in protein-ligand-lipid simulation
Anirban
- [gmx-users] How can i specify a user defined potential between i, i+2 residues
mohan maruthi sena
- [gmx-users] Fwd: How can i specify a user defined potential between i, i+2 residues
mohan maruthi sena
- [gmx-users] How can i specify a user defined potential between i, i+2 residues
Mark Abraham
- [gmx-users] What is the subroutine for SHAKE or RATTLE? Thanks.
Mark Abraham
- [gmx-users] nvt equilibration output
priya thiyagarajan
- [gmx-users] nvt equilibration output
Mark Abraham
- [gmx-users] nvt equilibration output
rama david
- [gmx-users] Re: NVT conserved-energy lysozyme
Mark Abraham
- [gmx-users] DSSP configuration in Gromacs 4.5.5
Sathish
- [gmx-users] DSSP configuration in Gromacs 4.5.5
Mark Abraham
- [gmx-users] Re: NVT conserved-energy lysozyme
daviddesancho
- [gmx-users] DSSP configuration in Gromacs 4.5.5
Sathish
- [gmx-users] DSSP configuration in Gromacs 4.5.5
Mark Abraham
- [gmx-users] pdb2gmx Warning: Long Bond
Lara Bunte
- [gmx-users] pdb2gmx Warning: Long Bond
Mark Abraham
- [gmx-users] grompp Unkown bond_atomtype C2
Lara Bunte
- [gmx-users] Wierd results from Umbrella sampling
Du Jiangfeng (BIOCH)
- [gmx-users] Test Particle Insertion
Steven Neumann
- [gmx-users] Test Particle Insertion
Javier Cerezo
- [gmx-users] Questions about Thermostats
Dommert Florian
- [gmx-users] Test Particle Insertion
Steven Neumann
- [gmx-users] Spherical shaped box
Kowsar Bagherzadeh
- [gmx-users] Minimization with DPOSRE
Steven Neumann
- [gmx-users] do_dssp segmentation fault error
bunty xy
- [gmx-users] Questions about Thermostats
Tsjerk Wassenaar
- [gmx-users] Spherical shaped box
Tsjerk Wassenaar
- [gmx-users] Test Particle Insertion
Javier Cerezo
- [gmx-users] TFE Proper Dihedral types...
Justin A. Lemkul
- [gmx-users] Coupling groups in protein-ligand-lipid simulation
Justin A. Lemkul
- [gmx-users] Questions about Thermostats
Dommert Florian
- [gmx-users] charge and ionization state at pH 6.5
Acoot Brett
- [gmx-users] do_dssp segmentation fault error
Justin A. Lemkul
- [gmx-users] Minimization with DPOSRE
Justin A. Lemkul
- [gmx-users] charge and ionization state at pH 6.5
Justin A. Lemkul
- [gmx-users] grompp Unkown bond_atomtype C2
Justin A. Lemkul
- [gmx-users] grompp Unkown bond_atomtype C2
Lara Bunte
- [gmx-users] grompp Unkown bond_atomtype C2
Justin A. Lemkul
- [gmx-users] Wierd results from Umbrella sampling
Justin A. Lemkul
- [gmx-users] (no subject)
rama david
- [gmx-users] (no subject)
Justin A. Lemkul
- [gmx-users] forcefields for lipids
Shima Arasteh
- [gmx-users] forcefields for lipids
Peter C. Lai
- [gmx-users] Wierd results from Umbrella sampling
lloyd riggs
- [gmx-users] forcefields for lipids
Justin A. Lemkul
- [gmx-users] forcefields for lipids
Thomas Piggot
- [gmx-users] forcefields for lipids
Shima Arasteh
- [gmx-users] PMF profile from Umbrella - Plateau
Steven Neumann
- [gmx-users] bonded interactions as table
mohan maruthi sena
- [gmx-users] PMF profile from Umbrella - Plateau
Justin A. Lemkul
- [gmx-users] bonded interactions as table
Justin A. Lemkul
- [gmx-users] umbrella sampling on GPU
Diana Fusco
- [gmx-users] PMF profile from Umbrella - Plateau
Steven Neumann
- [gmx-users] PMF profile from Umbrella - Plateau
Justin A. Lemkul
- [gmx-users] PMF profile from Umbrella - Plateau
Steven Neumann
- [gmx-users] Index selection in g_potential
Andrew DeYoung
- [gmx-users] Index selection in g_potential
Justin A. Lemkul
- [gmx-users] CM3 pont charges
Milinda Samaraweera
- [gmx-users] Tabulated potentials for the Dihedrals - regd
ramesh cheerla
- [gmx-users] itp file problem
Sarath Kumar Baskaran
- [gmx-users] What is the autocorrelation time
Christopher Neale
- [gmx-users] mixing Urey-Bradley and armonic in the same rtp file
francesco oteri
- [gmx-users] user defined potential(repulsive) for atoms falling with in three residues
mohan maruthi sena
- [gmx-users] itp file problem
Justin A. Lemkul
- [gmx-users] What is the autocorrelation time
ABEL Stephane 175950
- [gmx-users] Coupling Molecule type in *mdp file for Free Energy Simulation
Jackson Chief
- [gmx-users] What is the autocorrelation time
Christopher Neale
- [gmx-users] constranit distance for pulling code
xiaowu759
- [gmx-users] constranit distance for pulling code
Justin A. Lemkul
- [gmx-users] What is the subroutine for SHAKE or RATTLE? Thanks.
kevin
- [gmx-users] Pressure at constant volume
Juliette N.
- [gmx-users] Spherical shaped box
Kowsar Bagherzadeh
- [gmx-users] Index selection in g_potential
cuong nguyen
- [gmx-users] nvt equilibration output
priya thiyagarajan
- [gmx-users] parameterization of new metal ion
priya thiyagarajan
- [gmx-users] parameterization of new metal ion
Anirban
- [gmx-users] How to over come syntax errors
Seera Suryanarayana
- [gmx-users] distance restraints
Banafsheh Mehrazma
- [gmx-users] Fwd: How to overcome syntax errors
Seera Suryanarayana
- [gmx-users] Water molecule cannot be settled
Steven Neumann
- [gmx-users] What is the autocorrelation time
Erik Marklund
- [gmx-users] Pressure at constant volume
Erik Marklund
- [gmx-users] How to over come syntax errors
Erik Marklund
- [gmx-users] parameterization of new metal ion
priya thiyagarajan
- [gmx-users] Fwd: How to overcome syntax errors
Erik Marklund
- [gmx-users] Software inconsistency error with GROMACS4.5.5
Anirban
- [gmx-users] Place water away from existing atoms
Steven Neumann
- [gmx-users] parameterization of new metal ion
Justin A. Lemkul
- [gmx-users] Place water away from existing atoms
Javier Cerezo
- [gmx-users] Regarding topology error.
Seera Suryanarayana
- [gmx-users] Regarding topology error.
Justin A. Lemkul
- [gmx-users] Regarding Gas Phase Torsional Energetics
Ravi Kumar Venkatraman
- [gmx-users] distance restraints
Justin A. Lemkul
- [gmx-users] Regarding Gas Phase Torsional Energetics
Javier Cerezo
- [gmx-users] Pressure at constant volume
Juliette N.
- [gmx-users] Weird result of Umbrella Sampling
Du Jiangfeng (BIOCH)
- [gmx-users] Weird result of Umbrella Sampling
Justin A. Lemkul
- [gmx-users] Re: Pressure at constant volume
Dr. Vitaly V. Chaban
- [gmx-users] Place water away from existing atoms
Steven Neumann
- [gmx-users] Place water away from existing atoms
Justin A. Lemkul
- [gmx-users] Place water away from existing atoms
Steven Neumann
- [gmx-users] Place water away from existing atoms
Justin A. Lemkul
- [gmx-users] Place water away from existing atoms
Steven Neumann
- [gmx-users] grompp error - incorrect number of parameters
Lara Bunte
- [gmx-users] grompp error - incorrect number of parameters
Justin A. Lemkul
- [gmx-users] Place water away from existing atoms
Steven Neumann
- [gmx-users] Two [ dihedrals ] sections in topology
Lara Bunte
- [gmx-users] Place water away from existing atoms
Justin A. Lemkul
- [gmx-users] Two [ dihedrals ] sections in topology
Justin A. Lemkul
- [gmx-users] Re: mixing Urey-Bradley and armonic in the same rtp file
francesco oteri
- [gmx-users] Place water away from existing atoms
Steven Neumann
- [gmx-users] Two [ dihedrals ] sections in topology
Lara Bunte
- [gmx-users] Place water away from existing atoms
Justin A. Lemkul
- [gmx-users] Place water away from existing atoms
Steven Neumann
- [gmx-users] Two [ dihedrals ] sections in topology
francesco oteri
- [gmx-users] Force Constants and Unit Systems
Lara Bunte
- [gmx-users] Place water away from existing atoms
Justin A. Lemkul
- [gmx-users] charm in gromacs
francesco oteri
- [gmx-users] Force Constants and Unit Systems
Justin A. Lemkul
- [gmx-users] Force Constants and Unit Systems
Lara Bunte
- [gmx-users] Force Constants and Unit Systems
Justin A. Lemkul
- [gmx-users] Force Constants and Unit Systems
Richard Broadbent
- [gmx-users] Force Constants and Unit Systems
Lara Bunte
- [gmx-users] Force Constants and Unit Systems
Justin A. Lemkul
- [gmx-users] Force Constants and Unit Systems
Lara Bunte
- [gmx-users] Force Constants and Unit Systems
Justin A. Lemkul
- [gmx-users] repulsive interaction i and i+2
mohan maruthi sena
- [gmx-users] Place water away from existing atoms
Steven Neumann
- [gmx-users] Place water away from existing atoms
Justin A. Lemkul
- [gmx-users] Atom O5' not found in residue seq.nr. 1 while adding atom
mahr
- [gmx-users] charm in gromacs
Mark Abraham
- [gmx-users] What is the subroutine for SHAKE or RATTLE? Thanks.
Mark Abraham
- [gmx-users] grompp error - incorrect number of parameters
Mark Abraham
- [gmx-users] Regarding errors.
Seera Suryanarayana
- [gmx-users] Regarding errors.
Mark Abraham
- [gmx-users] Regarding error.
Seera Suryanarayana
- [gmx-users] Regarding error.
Anirban
- [gmx-users] Regarding error.
Mark Abraham
- [gmx-users] repulsive interaction i and i+2
Mark Abraham
- [gmx-users] Force Constants and Unit Systems
Lara Bunte
- [gmx-users] What is the autocorrelation time
Patrick Fuchs
- [gmx-users] Place water away from existing atoms
Steven Neumann
- [gmx-users] Force Constants and Unit Systems
Richard Broadbent
- [gmx-users] charm in gromacs
francesco oteri
- [gmx-users] Force Constants and Unit Systems
Lara Bunte
- [gmx-users] Water molecule cannot be settled
Steven Neumann
- [gmx-users] Regarding GROMACS interface with G03
Ravi Kumar Venkatraman
- [gmx-users] Atom O5' not found in residue seq.nr. 1 while adding atom
Justin A. Lemkul
- [gmx-users] Water molecule cannot be settled
Justin A. Lemkul
- [gmx-users] Re: What is the autocorrelation time
ABEL Stephane 175950
- [gmx-users] Water molecule cannot be settled
Javier Cerezo
- [gmx-users] Regarding GROMACS interface with G03
Javier Cerezo
- [gmx-users] Re: Umbrella Profile
Steven Neumann
- [gmx-users] Water molecule cannot be settled
Steven Neumann
- [gmx-users] forcefields for lipids
Shima Arasteh
- [gmx-users] forcefields for lipids
Shima Arasteh
- [gmx-users] Water molecule cannot be settled
Steven Neumann
- [gmx-users] Re: Fwd: itp file problem
Justin A. Lemkul
- [gmx-users] course grained fluorinated lipids martini mapping
maria goranovic
- [gmx-users] dipole moment of a molecule
Milinda Samaraweera
- [gmx-users] tabulated potentials for dihedrals - regd
ramesh cheerla
- [gmx-users] Different Lipids into one Moleculetype (for position restrain)
Ricardo O. S. Soares
- [gmx-users] BAR calculations with tabulated non-bonded potentials
Rustad, James R
- [gmx-users] Different Lipids into one Moleculetype (for position restrain)
Jan Marzinek
- [gmx-users] intermolecular H bond selection
mu xiaojia
- [gmx-users] Different Lipids into one Moleculetype (for position restrain)
Justin A. Lemkul
- [gmx-users] BAR calculations with tabulated non-bonded potentials
Justin A. Lemkul
- [gmx-users] intermolecular H bond selection
Justin A. Lemkul
- [gmx-users] What is the autocorrelation time
Christopher Neale
- [gmx-users] forcefields for lipids
Christopher Neale
- [gmx-users] What is the autocorrelation time
Christopher Neale
- [gmx-users] Different Lipids into one Moleculetype (for position restrain)
Peter C. Lai
- [gmx-users] Different Lipids into one Moleculetype (for position restrain)
Justin A. Lemkul
- [gmx-users] Different Lipids into one Moleculetype (for position restrain)
Peter C. Lai
- [gmx-users] forcefields for lipids
Shima Arasteh
- [gmx-users] extention of the simulation
Turgay Cakmak
- [gmx-users] extention of the simulation
Anirban
- [gmx-users] dipole moment of a molecule
Dommert Florian
- [gmx-users] Justin-lipid tutorials..
rama david
- [gmx-users] extention of the simulation
Justin A. Lemkul
- [gmx-users] Justin-lipid tutorials..
Justin A. Lemkul
- [gmx-users] Justin-lipid tutorials..
rama david
- [gmx-users] Justin-lipid tutorials..
Justin A. Lemkul
- [gmx-users] Justin-lipid tutorials..
rama david
- [gmx-users] Justin-lipid tutorials..
Justin A. Lemkul
- [gmx-users] Re: BAR calculations with tabulated non-bonded potentials
jrustad
- [gmx-users] Different Lipids into one Moleculetype (for position restrain)
Ricardo O. S. Soares
- [gmx-users] Re: BAR calculations with tabulated non-bonded potentials
Justin A. Lemkul
- [gmx-users] Re: BAR calculations with tabulated non-bonded potentials
jrustad
- [gmx-users] Re: BAR calculations with tabulated non-bonded potentials
Justin A. Lemkul
- [gmx-users] Re: BAR calculations with tabulated non-bonded potentials
jrustad
- [gmx-users] In Silico Compound Library Search
Nancy
- [gmx-users] constraints between protein ligand - metal chelation
R.S.K.Vijayan
- [gmx-users] constraints between protein ligand - metal chelation
Peter C. Lai
- [gmx-users] constraints between protein ligand - metal chelation
R.S.K.Vijayan
- [gmx-users] Lysozyme tutorial-error with moleculetype
delara aghaie
- [gmx-users] parameters of a residue
Shima Arasteh
- [gmx-users] restart REMD
Tomek Wlodarski
- [gmx-users] restart REMD
francesco oteri
- [gmx-users] What is the autocorrelation time
Erik Marklund
- [gmx-users] constraints between protein ligand - metal chelation
francesco oteri
- [gmx-users] MARTINI parameters for dodecyl maltoside (DDM)
francesco oteri
- [gmx-users] intermolecular H bond selection
mu xiaojia
- [gmx-users] restart REMD
Tomek Wlodarski
- [gmx-users] restart REMD
mu xiaojia
- [gmx-users] characterising monolayer molecule rotation
Michael Bernard Plazzer
- [gmx-users] LIE methodology check (mdrun -rerun cutoffs and box vectors)
Tom Dupree
- [gmx-users] intermolecular H bond selection
Anirban
- [gmx-users] Reg trr file
Ramya LN
- [gmx-users] REgarding redefined error.
Seera Suryanarayana
- [gmx-users] RE: Re: Wierd results from Umbrella sampling (lloyd riggs)
Du Jiangfeng (BIOCH)
- [gmx-users] RE: Re: Wierd results from Umbrella sampling (Justin A. Lemkul)
Du Jiangfeng (BIOCH)
- [gmx-users] Regarding error.
Seera Suryanarayana
- [gmx-users] constraints hbonds with 4.6
SebastianWaltz
- [gmx-users] Regarding error.
Javier Cerezo
- [gmx-users] What is the autocorrelation time
Patrick Fuchs
- [gmx-users] top/itp file to show parameters explicitly
Alan
- [gmx-users] Protein_Protein Simulation -reg
rethina malliga
- [gmx-users] constraints hbonds with 4.6
Berk Hess
- [gmx-users] MARTINI parameters for dodecyl maltoside (DDM)
Dariush Mohammadyani
- [gmx-users] MARTINI parameters for dodecyl maltoside (DDM)
francesco oteri
- [gmx-users] MARTINI parameters for dodecyl maltoside (DDM)
Dariush Mohammadyani
- [gmx-users] top/itp file to show parameters explicitly
Javier Cerezo
- [gmx-users] Polarization term in non-boded potential - Regd
ramesh cheerla
- [gmx-users] MARTINI parameters for dodecyl maltoside (DDM)
XAvier Periole
- [gmx-users] Coarse grained for Proteins
Steven Neumann
- [gmx-users] Coarse grained for Proteins
XAvier Periole
- [gmx-users] constraints between protein ligand - metal chelation
Peter C. Lai
- [gmx-users] constraints between protein ligand - metal chelation
francesco oteri
- [gmx-users] constraints between protein ligand - metal chelation
R.S.K.Vijayan
- [gmx-users] concatenate log files
Andreas Zink
- [gmx-users] Re: BAR calculations with tabulated non-bonded potentials
Justin A. Lemkul
- [gmx-users] Lysozyme tutorial-error with moleculetype
Justin A. Lemkul
- [gmx-users] Reg trr file
Justin A. Lemkul
- [gmx-users] top/itp file to show parameters explicitly
Justin A. Lemkul
- [gmx-users] concatenate log files
Justin A. Lemkul
- [gmx-users] RE: Re: Wierd results from Umbrella sampling (Justin A. Lemkul)
Justin A. Lemkul
- [gmx-users] Large forces on HIS hydrogen atoms
patrick wintrode
- [gmx-users] Large forces on HIS hydrogen atoms
Justin A. Lemkul
- [gmx-users] intermolecular H bond selection
Erik Marklund
- [gmx-users] Regarding error.
Seera Suryanarayana
- [gmx-users] Regarding error.
Dylan Smith
- [gmx-users] Reg trr file
Ramya LN
- [gmx-users] Reg trr file
Justin A. Lemkul
- [gmx-users] RE: Re: Wierd results from Umbrella sampling (Justin A. Lemkul)
Du Jiangfeng (BIOCH)
- [gmx-users] Installation of GROMACS on server
Shima Arasteh
- [gmx-users] Installation of GROMACS on server
Javier Cerezo
- [gmx-users] Installation of GROMACS on server
Anirban
- Fw: [gmx-users] Installation of GROMACS on server
Shima Arasteh
- Fw: [gmx-users] Installation of GROMACS on server
Javier Cerezo
- [gmx-users] top/itp file to show parameters explicitly
Alan
- [gmx-users] g_sorient with -v23 option
Dmitri Dubov
- [gmx-users] forcefields for lipids
Joakim Jämbeck
- [gmx-users] Regarding errors.
Seera Suryanarayana
- [gmx-users] Regarding errors.
Justin A. Lemkul
- [gmx-users] top/itp file to show parameters explicitly
Justin A. Lemkul
- [gmx-users] RE: Re: Wierd results from Umbrella sampling (Justin A. Lemkul)
Justin A. Lemkul
- [gmx-users] Regarding error.
Seera Suryanarayana
- [gmx-users] Regarding error.
Justin A. Lemkul
- [gmx-users] forcefields for lipids
Thomas Piggot
- [gmx-users] RE: Re: RE: Re: Wierd results from Umbrella sampling (Justin A. Lemkul)
Du Jiangfeng (BIOCH)
- [gmx-users] forcefields for lipids
Joakim Jämbeck
- [gmx-users] problem with solvent box in gromacs 4.5.4
patrick wintrode
- [gmx-users] Re: Wierd results from Umbrella, sampling (Justin A. Lemkul)
Thomas Schlesier
- [gmx-users] forcefields for lipids
Thomas Piggot
- [gmx-users] forcefields for lipids
Shima Arasteh
- [gmx-users] restart REMD
Tomek Wlodarski
- [gmx-users] RE: Re: Wierd results from Umbrella sampling (Justin A. Lemkul) (Thomas Schlesier)
Du Jiangfeng (BIOCH)
- [gmx-users] RE: Re: Wierd results from Umbrella sampling (Justin A. Lemkul) (Thomas Schlesier)
Du Jiangfeng (BIOCH)
- [gmx-users] problem with solvent box in gromacs 4.5.4
mu xiaojia
- [gmx-users] multiple dihedral definition and free energy calculation
francesco oteri
- [gmx-users] In Silico Compound Library Search
Lucio Ricardo Montero Valenzuela
- [gmx-users] Re: Wierd results from Umbrella sampling, (Justin A. Lemkul)
Thomas Schlesier
- [gmx-users] Re: Wierd results from Umbrella sampling, (Justin A. Lemkul)
Justin A. Lemkul
- [gmx-users] problem with solvent box in gromacs 4.5.4
Justin A. Lemkul
- [gmx-users] forcefields for lipids
Thomas Piggot
- [gmx-users] forcefields for lipids
Shima Arasteh
- [gmx-users] forcefields for lipids
Thomas Piggot
- [gmx-users] gromacs input file
Muyi Xu
- [gmx-users] PRODRG server issues
rainy908
- [gmx-users] unable to generate gro file -(only c alpha atoms -named as CB)
mohan maruthi sena
- [gmx-users] Distance restraints not working
Thomas Grant
- [gmx-users] PRODRG server issues
Justin A. Lemkul
- [gmx-users] unable to generate gro file -(only c alpha atoms -named as CB)
Justin A. Lemkul
- [gmx-users] Distance restraints not working
Justin A. Lemkul
- [gmx-users] RE: LIE methodology check
Tom Dupree
- [gmx-users] Chemical Potential
Fabian Casteblanco
- [gmx-users] restart REMD
Mark Abraham
- [gmx-users] RE: LIE methodology check
Mark Abraham
- [gmx-users] gromacs input file
Mark Abraham
- [gmx-users] problem with solvent box in gromacs 4.5.4
Tsjerk Wassenaar
- [gmx-users] Chemical Potential
Marzinek, Jan
- [gmx-users] g_rms -bm
Kowsar Bagherzadeh
- [gmx-users] Gromacs files to simulate SiO2 film
Alexey Lyulin
- [gmx-users] RE: Re: Wierd results from Umbrella sampling (Justin A. Lemkul)(Thomas Schlesier)
Du Jiangfeng (BIOCH)
- [gmx-users] top/itp file to show parameters explicitly
Alan
- [gmx-users] top/itp file to show parameters explicitly
Mark Abraham
- [gmx-users] Re: Gromacs files to simulate SiO2 film
jrustad
- [gmx-users] H3 of NPRO missing in AMBER force field
SebastianWaltz
- [gmx-users] Re: Gromacs files to simulate SiO2 film
Alexey Lyulin
- [gmx-users] Re: Gromacs files to simulate SiO2 film
jrustad
- [gmx-users] Fatal error: atom C not found in buiding block 19NH2 while combining tdb and rtp
ankita oindrila
- [gmx-users] H3 of NPRO missing in AMBER force field
Justin A. Lemkul
- [gmx-users] Fatal error: atom C not found in buiding block 19NH2 while combining tdb and rtp
Justin A. Lemkul
- [gmx-users] Re: Wierd results from Umbrella sampling
Thomas Schlesier
- [gmx-users] g_polystat
Leandro
- [gmx-users] Re: Chemical Potential
Fabian Casteblanco
- [gmx-users] What is the autocorrelation time
Erik Marklund
- [gmx-users] Justin umbrella sampling tutorial......
rama david
- [gmx-users] RE: Re: Wierd results from Umbrella sampling (Thomas Schlesier)
Du Jiangfeng (BIOCH)
- [gmx-users] RE: Justin umbrella sampling tutorial...... (rama david)
Du Jiangfeng (BIOCH)
- [gmx-users] H3 of NPRO missing in AMBER force field
SebastianWaltz
- [gmx-users] RE: Justin umbrella sampling tutorial...... (rama david)
rama david
- [gmx-users] BAR and non-bonded tables revisited
jrustad
- [gmx-users] Protein moves out of box after several simulations, how to fix it?
Marc Hömberger
- [gmx-users] Justin umbrella sampling tutorial......
Justin A. Lemkul
- [gmx-users] H3 of NPRO missing in AMBER force field
Justin A. Lemkul
- [gmx-users] Protein moves out of box after several simulations, how to fix it?
Justin A. Lemkul
- [gmx-users] Gromacs installed , but no directory /bin under it
aiqunhuang at knights.ucf.edu
- [gmx-users] Re: Distance restraints not working
tdgrant1
- [gmx-users] Re: Distance restraints not working
Justin A. Lemkul
- [gmx-users] Gromacs installed , but no directory /bin under it
Justin A. Lemkul
- [gmx-users] Gromacs installed , but no directory /bin under it
Justin A. Lemkul
- [gmx-users] Restarting a run
Shyno Mathew
- [gmx-users] Gromacs installed , but no directory /bin under it
Justin A. Lemkul
- [gmx-users] Restarting a run
Justin A. Lemkul
- [gmx-users] Regarding error.
Seera Suryanarayana
- [gmx-users] Regarding error.
Seera Suryanarayana
- [gmx-users] Regarding gromacs manual.
Seera Suryanarayana
- [gmx-users] Justin umbrella sampling tutorial......
rama david
- [gmx-users] Regarding gromacs manual.
Chandan Choudhury
- [gmx-users] Regarding error.
rama david
- [gmx-users] Justin umbrella sampling tutorial......
Justin A. Lemkul
- [gmx-users] g_rms -bm
Kowsar Bagherzadeh
- [gmx-users] g_rms -bm
Justin A. Lemkul
- [gmx-users] Justin umbrella sampling tutorial......
rama david
- [gmx-users] Justin umbrella sampling tutorial......
Justin A. Lemkul
- [gmx-users] ptn ptn interaction
rethina malliga
- [gmx-users] Tabulated potential 1-4 interactions
mohan maruthi sena
- [gmx-users] ptn ptn interaction
Justin A. Lemkul
- [gmx-users] Justin umbrella sampling tutorial......
rama david
- [gmx-users] Re: Regarding error.
vivek sharma
- [gmx-users] g_rms -bm
Kowsar Bagherzadeh
- [gmx-users] Justin umbrella sampling tutorial......
Justin A. Lemkul
- [gmx-users] Justin umbrella sampling tutorial......
rama david
- [gmx-users] Distance Restraints of 3 atoms
Steven Neumann
- [gmx-users] Protein-ligand interactions in implicit water
Андрей Гончар
- [gmx-users] trjconv_snapshot
Turgay Cakmak
- [gmx-users] trjconv_snapshot
rama david
- [gmx-users] trjconv_snapshot
Turgay Cakmak
- [gmx-users] trjconv_snapshot
rama david
- [gmx-users] One molculetype for 3 proteins
Steven Neumann
- [gmx-users] Re: One molculetype for 3 proteins
Steven Neumann
- [gmx-users] CHARMM-27 & CHARMM-36
Shima Arasteh
- [gmx-users] Re: One molculetype for 3 proteins
Tsjerk Wassenaar
- [gmx-users] Equilibrating Water around the Molecule
Lara Bunte
- [gmx-users] Selectively minimze Hydrogens
Kartheek
- [gmx-users] Re: One molculetype for 3 proteins
Steven Neumann
- [gmx-users] (no subject)
Pathumwadee Intharathep
- [gmx-users] Re: One molculetype for 3 proteins
Tsjerk Wassenaar
- [gmx-users] Re: One molculetype for 3 proteins
Francesca
- [gmx-users] Re: One molculetype for 3 proteins
Tsjerk Wassenaar
- [gmx-users] Re: One molculetype for 3 proteins
Steven Neumann
- [gmx-users] ACE residues at positions other than resnr=1 possibly leading to non-sequential residue numbering by editconf and trjconv
Christopher Neale
- [gmx-users] Re: One molculetype for 3 proteins
Francesca
- [gmx-users] CHARMM-27 & CHARMM-36
Felipe Merino
- [gmx-users] Justin umbrella sampling tutorial......
Justin A. Lemkul
- [gmx-users] trjconv_snapshot
Justin A. Lemkul
- [gmx-users] Selectively minimze Hydrogens
Justin A. Lemkul
- [gmx-users] Equilibrating Water around the Molecule
Justin A. Lemkul
- [gmx-users] Regarding error
Seera Suryanarayana
- [gmx-users] Re: gmx-users Digest, Vol 97, Issue 185
rethina malliga
- [gmx-users] Re: One molculetype for 3 proteins
Steven Neumann
- [gmx-users] Extraction of low-energy conformations
Андрей Гончар
- [gmx-users] Re: One molculetype for 3 proteins
Steven Neumann
- [gmx-users] electrostatic component of the forces
Julian Mondon-Garrec
- [gmx-users] unknown cmap torsion between atoms
Steven Neumann
- [gmx-users] Problems of gmx4.5.5 on the E3-1230 V2 CPU (Ivy Bridge)
石子枫
- [gmx-users] nbnxn_hybrid_acc branch rewritten
Szilárd Páll
- [gmx-users] Regarding error
Justin A. Lemkul
- [gmx-users] ptn ptn interaction
Justin A. Lemkul
- [gmx-users] unknown cmap torsion between atoms
Justin A. Lemkul
- [gmx-users] Regarding error
Marzinek, Jan
- [gmx-users] Re: One molculetype for 3 proteins
Tsjerk Wassenaar
- [gmx-users] Simulation protocol for Protein-DNA-complex
Matthias Ernst
- [gmx-users] Re: Gromacs
Dr. Vitaly V. Chaban
- [gmx-users] Extraction of low-energy conformations
Tsjerk Wassenaar
- [gmx-users] Re: Re : Gromacs
Dr. Vitaly V. Chaban
- [gmx-users] Re: Re : Re : Gromacs
Dr. Vitaly V. Chaban
- [gmx-users] Re: One molculetype for 3 proteins
Francesca
- [gmx-users] Re: Justin umbrella sampling tutorial......
Thomas Schlesier
- [gmx-users] electrostatic component of the forces
Mark Abraham
- [gmx-users] unknown cmap torsion between atoms
Mark Abraham
- [gmx-users] unknown cmap torsion between atoms
Steven Neumann
- [gmx-users] Simulation protocol for Protein-DNA-complex
Justin A. Lemkul
- [gmx-users] Re: Re : Re : Re : Gromacs
Dr. Vitaly V. Chaban
- [gmx-users] sudden jumps in RMSD etc.
mu xiaojia
- [gmx-users] Re: One molculetype for 3 proteins
Steven Neumann
- [gmx-users] "Mutating" type BAR calculations
jrustad
- [gmx-users] Re: One molculetype for 3 proteins
Francesca
- [gmx-users] Re: FCC lattice of argon
Dr. Vitaly V. Chaban
- [gmx-users] unknown cmap torsion between atoms
Steven Neumann
- [gmx-users] Re: One molculetype for 3 proteins
Steven Neumann
- [gmx-users] unknown cmap torsion between atoms
Justin A. Lemkul
- [gmx-users] Bonds between New residues and Terminals
Steven Neumann
- [gmx-users] Bonds between New residues and Terminals
Justin A. Lemkul
- [gmx-users] PubChem Online Compound Search and Download
Nancy
- [gmx-users] Simulation protocol for Protein-DNA-complex
Peter C. Lai
- [gmx-users] Coordinate file for lipid bilayer
James Starlight
- [gmx-users] Coordinate file for lipid bilayer
Peter C. Lai
- [gmx-users] Re: gmx-users Digest, Vol 97, Issue 196
rethina malliga
- [gmx-users] Calculating number density using g_density
Andrew DeYoung
- [gmx-users] How to read in netcdf with GROMACS?
a a
- [gmx-users] How to read in netcdf with GROMACS?
a a
- Re: [gmx-users] How to read in netcdf with GROMACS?
Bala subramanian
- [gmx-users] Simulation protocol for Protein-DNA-complex
Erik Marklund
- [gmx-users] Problems of gmx4.5.5 on the E3-1230 V2 CPU (Ivy Bridge)
Roland Schulz
- Re: [gmx-users] How to read in netcdf with GROMACS?
Roland Schulz
- RE: [gmx-users] How to read in netcdf with GROMACS?
a a
- [gmx-users] trjconv -conect
vijaya subramanian
- [gmx-users] trjconv -conect
Justin A. Lemkul
- [gmx-users] trjconv -conect
vijaya subramanian
- [gmx-users] trjconv -conect
Justin A. Lemkul
- [gmx-users] trjconv -conect
Tsjerk Wassenaar
- [gmx-users] trjconv -conect
Justin A. Lemkul
- [gmx-users] trjconv -conect
vijaya subramanian
- [gmx-users] trjconv -conect
Justin A. Lemkul
- [gmx-users] xtc-precision
Igor Druz
- [gmx-users] trjconv -conect
Justin A. Lemkul
- [gmx-users] xtc-precision
Justin A. Lemkul
- [gmx-users] xtc-precision
Mark Abraham
- [gmx-users] xtc-precision
Justin A. Lemkul
- [gmx-users] xtc-precision
Igor Druz
- [gmx-users] xtc-precision
Mark Abraham
- [gmx-users] Supported GPU's and benchmarks, specifically GTX 690?
James Ryley
- [gmx-users] crude interaction energy using g_energy
sai nitin
- [gmx-users] crude interaction energy using g_energy
Justin A. Lemkul
- [gmx-users] crude interaction energy using g_energy
Justin A. Lemkul
- [gmx-users] Partial charges for Anilinium OPLSAA
Milinda Samaraweera
- [gmx-users] Coordinate file for lipid bilayer
James Starlight
- [gmx-users] amber2xtc.py error
Albert
- [gmx-users] Coordinate file for lipid bilayer
Jon Kapla
- [gmx-users] Extend Umbrella Windows
Steven Neumann
- [gmx-users] crude interaction energy using g_energy
lloyd riggs
- [gmx-users] comparing simulations with diffrent forcefields
Kowsar Bagherzadeh
- [gmx-users] Fwd: amber2xtc.py error
Albert
- [gmx-users] Re: Umbrella Profile
Steven Neumann
- [gmx-users] Extend Umbrella Windows
Justin A. Lemkul
- [gmx-users] comparing simulations with diffrent forcefields
Justin A. Lemkul
- [gmx-users] Coordinate file for lipid bilayer
Christopher Neale
- [gmx-users] Position Restraints of one of the moleculetpye
Steven Neumann
- [gmx-users] no pr.gro file for energy minimization
Lara Bunte
- [gmx-users] no pr.gro file for energy minimization
Peter C. Lai
- [gmx-users] Position Restraints of one of the moleculetpye
Justin A. Lemkul
- [gmx-users] Measure of density in homo- and heterogeneous systems
James Starlight
- [gmx-users] Measure of density in homo- and heterogeneous systems
Justin A. Lemkul
- [gmx-users] Re: Justin umbrella sampling tutorial......
rama david
- [gmx-users] Re: Justin umbrella sampling tutorial......
rama david
- [gmx-users] Re: Justin umbrella sampling tutorial......
Justin A. Lemkul
- [gmx-users] Re: Justin umbrella sampling tutorial......
rama david
- [gmx-users] Re: Justin umbrella sampling tutorial......
Justin A. Lemkul
- [gmx-users] Re: Justin umbrella sampling tutorial......
rama david
- [gmx-users] Re: Justin umbrella sampling tutorial......
Justin A. Lemkul
- [gmx-users] Re: Justin umbrella sampling tutorial......
rama david
- [gmx-users] REMD question
Nathalia Garces
- [gmx-users] REMD question
Michael Shirts
- [gmx-users] GROMACS Installation problem: libfftw3f.so.3: cannot open shared object file
a a
- [gmx-users] Measure of density in homo- and heterogeneous systems
James Starlight
- [gmx-users] GROMACS Installation problem: libfftw3f.so.3: cannot open shared object file
Mark Abraham
- [gmx-users] Measure of density in homo- and heterogeneous systems
Mark Abraham
- [gmx-users] Calculating number density using g_density
Mark Abraham
- [gmx-users] charm in gromacs
Mark Abraham
- [gmx-users] electrostatic component of the forces
Julian Mondon-Garrec
- [gmx-users] Regarding error
Seera Suryanarayana
- [gmx-users] Regarding error
Emanuel Birru
- [gmx-users] How to install GROMACS in 64-bit?
a a
- [gmx-users] How to install GROMACS in 64-bit?
Mark Abraham
- [gmx-users] Possible bug: energy changes with the number of nodes for energy minimization
Stephen Cox
- [gmx-users] hydration layers around protein
Bala subramanian
- [gmx-users] hydration layers around protein
Andrea Coletta
- [gmx-users] Position Restraints of one of the moleculetpye
Steven Neumann
- [gmx-users] Position Restraints of one of the moleculetpye
Justin A. Lemkul
- [gmx-users] Position Restraints of one of the moleculetpye
Steven Neumann
- [gmx-users] How to generate the initial coordinates file?
Bao Kai
- [gmx-users] How to generate the initial coordinates file?
Justin A. Lemkul
- [gmx-users] Possible bug: energy changes with the number of nodes for energy minimization
Justin A. Lemkul
- [gmx-users] How to install GROMACS in 64-bit?
a a
- [gmx-users] Re: How to generate the initial coordinates file?
Bao Kai
- [gmx-users] Re: How to generate the initial coordinates file?
Justin A. Lemkul
- [gmx-users] hydration layers around protein
francesco oteri
- [gmx-users] How to install GROMACS in 64-bit?
Mark Abraham
- [gmx-users] trajectory analysis
oguz gurbulak
- [gmx-users] trajectory analysis
Mark Abraham
- [gmx-users] can Gromacs 4.5 use VDW long range correction? IN the mannual, In this version, GROMACS always uses a cut-off radius for the Lennard-Jones interactions
MD
- [gmx-users] can Gromacs 4.5 use VDW long range correction? IN the mannual, In this version, GROMACS always uses a cut-off radius for the Lennard-Jones interactions
Mark Abraham
- [gmx-users] xmgrace-plotting of g_sas output (averages+standarddeviation)
Marc Hömberger
- [gmx-users] Fw:Re:gmx-users Digest, Vol 97, Issue 218
MD
- [gmx-users] Fw:Re:gmx-users Digest, Vol 97, Issue 218
Mark Abraham
- [gmx-users] Lipid A Topology
Thomas Piggot
- [gmx-users] can Gromacs 4.5 use VDW long range correction? IN the mannual, In this version, GROMACS always uses a cut-off radius for the Lennard-Jones interactions
Dommert Florian
- [gmx-users] xmgrace-plotting of g_sas output (averages+standarddeviation)
Justin A. Lemkul
- [gmx-users] Regarding g_wham options
Nitin Agrawal
- [gmx-users] Regarding g_wham options
Justin A. Lemkul
- [gmx-users] Regarding g_wham options
Nitin Agrawal
- [gmx-users] angling bond at at one of the terminal ends
ramaraju801
- [gmx-users] angling bond at at one of the terminal ends
Mark Abraham
- [gmx-users] Re: Possible bug: energy changes with the number of nodes for energy minimization
Stephen Cox
- [gmx-users] xmgrace-plotting of g_sas output (averages+standarddeviation)
Marc Hömberger
- [gmx-users] Re: Possible bug: energy changes with the number of nodes for energy minimization
Justin A. Lemkul
- [gmx-users] Re: Possible bug: energy changes with the number of nodes for energy minimization
Mark Abraham
- [gmx-users] xmgrace-plotting of g_sas output (averages+standarddeviation)
Justin A. Lemkul
- [gmx-users] Regarding g_wham options
Nitin Agrawal
- [gmx-users] Regarding g_wham options
Justin A. Lemkul
- [gmx-users] Regarding g_wham options
Nitin Agrawal
- [gmx-users] Regarding g_wham options
Justin A. Lemkul
- [gmx-users] Regarding g_wham options
Justin A. Lemkul
- [gmx-users] Regarding g_wham options
Nitin Agrawal
- [gmx-users] Possible bug: energy changes with the number of nodes for energy minimization
Teemu Murtola
- [gmx-users] OPLS specific problem in gromacs 4.5.4
patrick wintrode
- [gmx-users] OPLS specific problem in gromacs 4.5.4
Justin A. Lemkul
- [gmx-users] Re: Possible bug: energy changes with the number of nodes for energy minimization
Stephen Cox
- [gmx-users] Re: dangling bond at at one of the terminal ends
ramaraju801
- [gmx-users] mutational analyses: Cystine and indels
Frederico Moras Ferreira
- [gmx-users] mutational analyses: Cystine and indels
Peter C. Lai
- [gmx-users] problem with plumed version of gromacs in replica exchange
Sanku M
- [gmx-users] Thermodynamic Integration Glu -> Ala Mutation
Sai Kumar Ramadugu
- [gmx-users] mutational analyses: Cystine and indels
Frederico Moraes Ferreira
- [gmx-users] Calculating the average separation between two multi-atom groups
Andrew DeYoung
- [gmx-users] dangling bond at at least one of the terminal ends and the force field does not provide terminal entries or files. Edit a .n.tdb and/or .c.tdb file.
ramaraju801
- [gmx-users] How GROMACS calculate the energy of hydrogen bond
Acoot Brett
- [gmx-users] How GROMACS calculate the energy of hydrogen bond
Mark Abraham
- [gmx-users] dangling bond at at least one of the terminal ends and the force field does not provide terminal entries or files. Edit a .n.tdb and/or .c.tdb file.
Mark Abraham
- [gmx-users] Calculating the average separation between two multi-atom groups
Mark Abraham
- [gmx-users] How GROMACS calculate the energy of hydrogen bond
Acoot Brett
- [gmx-users] How GROMACS calculate the energy of hydrogen bond
Mark Abraham
- [gmx-users] OPLS specific problem in gromacs 4.5.4
Ignacio Fernández Galván
- [gmx-users] PME nodes
Ignacio Fernández Galván
- [gmx-users] PME nodes
Peter C. Lai
- [gmx-users] PME nodes
Mark Abraham
- [gmx-users] (no subject)
Subramaniam Boopathi
- [gmx-users] (no subject)
Justin A. Lemkul
- [gmx-users] (no subject)
Mark Abraham
- [gmx-users] About gomacs MPI installation
vidhya sankar
- [gmx-users] About gomacs MPI installation
Justin A. Lemkul
- [gmx-users] About gomacs MPI installation
Mark Abraham
- [gmx-users] How GROMACS calculate the energy of hydrogen bond
lloyd riggs
- [gmx-users] REMD question
Nathalia Garces
- [gmx-users] surface tension, Long range LJ correction, TIP4P/2005
MD
- [gmx-users] surface tension, Long range LJ correction, TIP4P/2005
Mark Abraham
- [gmx-users] Re: Calculating the average separation between two multi-atom groups
Andrew DeYoung
- [gmx-users] Re : How GROMACS calculate the energy of hydrogen bond
ABEL Stephane 175950
- [gmx-users] About usage of node in mpi calculation
vidhya sankar
- [gmx-users] About usage of node in mpi calculation
Justin A. Lemkul
- [gmx-users] (no subject)
Marc Charendoff
- [gmx-users] boundaries in PMF
Rebeca García Fandiño
- [gmx-users] boundaries in PMF
Justin A. Lemkul
- [gmx-users] boundaries in PMF
Rebeca García Fandiño
- [gmx-users] MD Training
edward.deira at gmail.com
- [gmx-users] boundaries in PMF
Justin A. Lemkul
- [gmx-users] mutational analyses: Cystine and indels
Frederico Moraes Ferreira
- [gmx-users] boundaries in PMF
Rebeca García Fandiño
- [gmx-users] boundaries in PMF
Justin A. Lemkul
- [gmx-users] Re: boundaries in PMF
Thomas Schlesier
- [gmx-users] Re: boundaries in PMF
Rebeca García Fandiño
- [gmx-users] Re: boundaries in PMF
Justin A. Lemkul
- [gmx-users] Re: boundaries in PMF
Rebeca García Fandiño
- [gmx-users] Re: boundaries in PMF
Justin A. Lemkul
- [gmx-users] Re: boundaries in PMF
Rebeca García Fandiño
Last message date:
Thu May 31 21:58:26 CEST 2012
Archived on: Thu Nov 14 12:12:51 CET 2013
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