[gmx-users] Problem in GROMACS installation

[Mark Abraham]

On 6/05/2012 9:08 PM, amit banerjee wrote:
> Dear Gromacs Users,
>                                I am trying to install gromacs 4.5.5 
> version in a CENTOS 5.4 machine with FFTW 3.3.1.
> To do so, I have downloaded both the tar.gz files in root and tried to 
> install them as per the standard installation protocol.
> Unfortunately i am receiving the following error.
> /usr/bin/ld: /usr/local/lib/libfftw3f.a(apiplan.o): relocation 
> R_X86_64_32 against `a local symbol' can not be used when making a 
> shared object; recompile with -fPIC
> /usr/local/lib/libfftw3f.a: could not read symbols: Bad value
> collect2: ld returned 1 exit status
> make[3]: *** [libmd.la] Error 1
> make[3]: Leaving directory `/root/gromacs-4.5.5/src/mdlib'
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/root/gromacs-4.5.5/src'
> make[1]: *** [all] Error 2
> make[1]: Leaving directory `/root/gromacs-4.5.5/src'
> make: *** [all-recursive] Error 1
>

See 
http://www.gromacs.org/Documentation/Installation_Instructions#Details_for_building_the_FFTW_prerequisite

Mark
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