[gmx-users] Go model -error in generating topology

mohan maruthi sena maruthi.sena at gmail.com
Wed May 9 14:37:09 CEST 2012

Hi all,
          I try to build go model(which uses only c-alpha atoms), my pdb
contains only c-alpha atoms extracted from the original pdb file ,when i
use pdb2gmx command on c-alpha containing pdb file it gives the following

            Atom N is used in an interaction of type atom in the topology
          database, but an atom of that name was not found in residue
            number 1.
Please suggest me a way ,

Thanking you in advance,
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