[gmx-users] Bonds between planar group of atoms

Steven Neumann s.neumann08 at gmail.com
Wed May 9 15:05:29 CEST 2012

Dear Gmx Users,

My surface is made of different atoms (Fe, Na, H). I would like to create
bonds between them so the surface will be stable. Is there a command in
gromacs to create [ bonds ] and to add to your topology?
I tried to use specbond.dat but none bonds were created. It could be
manually quite time consuming.

Thank you

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