[gmx-users] dangling bond at at least one of the terminal ends and the force field does not provide terminal entries or files. Edit a .n.tdb and/or .c.tdb file.
ramaraju801 at gmail.com
Thu May 31 08:13:36 CEST 2012
when i ran gromacs to produce topology file for a nucleotide sequence it is
showing the above error saying "There is a dangling bond at at least one of
the terminal ends and the force field does not provide terminal entries or
files. Edit a .n.tdb and/or .c.tdb file". i tried giving the starting and
ending residues in .n.tdb and .c.tdb files but it did not work with an
error saying "Fatal error:
reading termini database: directive expected before line:
am uploading my PDB file of my DNA-protein compex sequence in which the
nucleotide sequence ranges from 15555 to 12216
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