[gmx-users] surface tension, Long range LJ correction, TIP4P/2005
MD
ptf1242 at 163.com
Thu May 31 16:18:58 CEST 2012
Hi All,
I really need to know how to apply long range LJ correction to calculate surface tension of TIP4P/2005 water. I can get 65 dyn even i use vdw cut-off = 1.4 nm, but from the reference people can get 69 dyn.
I included the LJ Long range LJ correction using the following .mdp,
please note that i used: DispCorr = EnerPres, which means i included the long range LJ correction for energy and pressure, but why i can get only 65 dyn for surface tension. I can see Disper. corr. in the .log file, but i saw
Table routines are used for coulomb: TRUE
Table routines are used for vdw: FALSE
I spend two weeks on this ,but still failed to know the reason, because only myself do MD in my department. Can anyone help??
title = Yo
cpp = /usr/bin/cpp
include =
define =
integrator = md
tinit = 0
dt = 0.001
nsteps = 5000000
init_step = 0
comm-mode = Linear
nstcomm = 1
comm-grps =
bd-fric = 0
ld-seed = 1993
niter = 20
nstxout = 5000
nstvout = 8000
nstfout = 8000
nstcheckpoint = 1000
nstlog = 5000
nstenergy = 5000
nstxtcout = 500
xtc-precision = 1000
xtc-grps =
energygrps =
nstlist = 5
ns_type = grid
pbc = xyz
rlist = 1.4
domain-decomposition = no
coulombtype = PME
rcoulomb-switch = 0
rcoulomb = 1.4
epsilon-r = 1
vdw-type = Cut-off
rvdw-switch = 0
rvdw = 1.4
DispCorr = EnerPres
table-extension = 1
fourierspacing = 0.12
fourier_nx = 0
fourier_ny = 0
fourier_nz = 0
pme_order = 4
ewald_rtol = 1e-05
ewald_geometry = 3d
epsilon_surface = 0
optimize_fft = no
gb_algorithm = Still
nstgbradii = 1
rgbradii = 2
gb_saltconc = 0
implicit_solvent = No
Tcoupl = v-rescale
tc-grps = System
tau_t = 0.1
ref_t = 300
Pcoupl = no
Pcoupltype = isotropic
tau_p = 1
compressibility = 4.5e-5
ref_p = 1.0
andersen_seed = 815131
annealing = no
annealing_npoints =
annealing_time =
annealing_temp =
gen_vel = yes
gen_temp = 300
gen_seed = 1993
constraints = none
constraint-algorithm = Lincs
unconstrained-start = no
Shake-SOR = no
shake-tol = 1e-04
lincs-order = 4
lincs-iter = 1
lincs-warnangle = 30
morse = no
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