[gmx-users] Installation problems with MacOS 10.7.5

Mark Abraham mark.j.abraham at gmail.com
Mon Nov 26 18:44:24 CET 2012


You need to name libraries with FFTW3F_LIBRARIES, not the library path.
That explains the dropped dependency and subsequent problems.

Mark

On Mon, Nov 26, 2012 at 4:19 PM, Stefan Jasconek <
stjascho at students.uni-mainz.de> wrote:

> Dear Users,
> I have problems with the installation of GROMACS 4.5.5 on MacOS 10.7.5.
> GCC version 4.2.1
> FFTW is: FFTW-3.3.2.
> The CMAke command
> cmake     -DGMX_THREAD_MPI=OFF \
>                -DFFTW3F_INCLUDE_DIR=$FFTWDIR/**include \
>                -DFFTW3F_LIBRARIES=$FFTWDIR/**lib \
>                -DGMX_X11=OFF \
>                -DCMAKE_INSTALL_PREFIX=$(pwd) \
>                -DGMX_MPI=OFF \
>                -DGMX_THREADS=OFF \
>                -DBUILD_SHARED_LIBS=OFF \
>                 /Users/jaschone/Downloads/**gromacs-4.5.5
> Where CCDIR is the location of the GCC binary, FFTWDIR is the location of
> the FFTW stuff.
>
> I get the following error mesage:
> WARNING: Target "md" requests linking to directory
> "/Users/jaschone/progs/lib".  Targets may link only to libraries. CMake is
> dropping the item.
> and for the other binaries I get similar messages.
> Using MAKE results in the follwing error:
>
> /Users/jaschone/Downloads/**gromacs-4.5.5/src/kernel/**gmxdump.c:150:11:
> warning: expression result unused [-Wunused-value]
>       if (state,tpx.bF) {
>           ^~~~~
> 1 warning generated.
> Undefined symbols for architecture x86_64:
>   "_fftwf_plan_guru_dft_r2c", referenced from:
>       _fft5d_plan_3d in libmd.a(fft5d.c.o)
> and then similar errors for other routines.
> The complete STD.OUT and STD.ERR files for the CMAKE and the MAKE command
> were saved.
> Does anyone has an idea for an solution?
> --
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