[gmx-users] Ion conduction through a protein-membrane system

[Carsten Kutzner]

Hi Shima,

there is also a patch for Gromacs available to study ion conduction through
membrane channels that you might find useful. Please take a look at this page:

http://www.mpibpc.mpg.de/grubmueller/compel

Best,
  Carsten



On Oct 2, 2012, at 8:16 AM, Shima Arasteh <shima_arasteh2001 at yahoo.com> wrote:

> 
> 
>  Dear users,
> 
> I want to study ion conduction through a protein-memrane system. 
> First of all, I tried to simulate a usual protein-membrane system. I'd like to know if it is possible to add asymmetrical number of ions to leaflets of membrane?
> Secondly, is it possible to  apply an external electrical field to study ion conduction in a system?
> 
> Thanks in advance.
> 
> 
> Sincerely,
> Shima
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--
Dr. Carsten Kutzner
Max Planck Institute for Biophysical Chemistry
Theoretical and Computational Biophysics
Am Fassberg 11, 37077 Goettingen, Germany
Tel. +49-551-2012313, Fax: +49-551-2012302
http://www.mpibpc.mpg.de/grubmueller/kutzner