[gmx-users] Ion conduction through a protein-membrane system

Shima Arasteh shima_arasteh2001 at yahoo.com
Tue Oct 2 09:53:10 CEST 2012

Thanks Casten.

----- Original Message -----
From: Carsten Kutzner <ckutzne at gwdg.de>
To: Shima Arasteh <shima_arasteh2001 at yahoo.com>; Discussion list for GROMACS users <gmx-users at gromacs.org>
Sent: Tuesday, October 2, 2012 11:02 AM
Subject: Re: [gmx-users] Ion conduction through a protein-membrane system

Hi Shima,

there is also a patch for Gromacs available to study ion conduction through
membrane channels that you might find useful. Please take a look at this page:



On Oct 2, 2012, at 8:16 AM, Shima Arasteh <shima_arasteh2001 at yahoo.com> wrote:

>  Dear users,
> I want to study ion conduction through a protein-memrane system. 
> First of all, I tried to simulate a usual protein-membrane system. I'd like to know if it is possible to add asymmetrical number of ions to leaflets of membrane?
> Secondly, is it possible to  apply an external electrical field to study ion conduction in a system?
> Thanks in advance.
> Sincerely,
> Shima
> -- 
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Dr. Carsten Kutzner
Max Planck Institute for Biophysical Chemistry
Theoretical and Computational Biophysics
Am Fassberg 11, 37077 Goettingen, Germany
Tel. +49-551-2012313, Fax: +49-551-2012302

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