[gmx-users] Angle between two six membered rings

[bipin singh]

Hello all,

I was trying to calculate the normal-normal angle between the two six
membered rings using g_sgangle. I was considering the 3 atoms to
define the plane for each six membered ring but I am not getting the
correct values of normal-normal angle from g_sgangle in this way.
Please suggest me the correct way to calculate it in gromacs .

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Thanks and Regards,
Bipin Singh