[gmx-users] Calculating tertiary structure rotation

[Mark Abraham]

On 13/09/2012 2:42 AM, Rajiv wrote:
> Dear all,
>
> I would like to measure the rotation angle of helix movement during MD simulation course. Can you tell me how can I measure and make that rotation angle plot ? Thanks.

Have a look in manual sections 7.4, chapter 8 and then Appendix D. You 
can probably make something work, but you might require some creativity.

Mark