September 2012 Archives by thread

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Starting: Sat Sep 1 03:45:13 CEST 2012
Ending: Sun Sep 30 19:06:29 CEST 2012
Messages: 674

• [gmx-users] Elastic network model   Mark Abraham
• [gmx-users] Re: Turning off electrostatics between groups using custom tables?   Mark Abraham
  • [gmx-users] Re: Turning off electrostatics between groups using custom tables?   Smitty
    • [gmx-users] Re: Turning off electrostatics between groups using custom tables?   Erik Marklund
      • [gmx-users] Re: Turning off electrostatics between groups using custom tables?   Smitty
• [gmx-users] Hydrogen bond breaking process   Rajiv Gandhi
  • [gmx-users] Hydrogen bond breaking process   Justin Lemkul
    • [gmx-users] Hydrogen bond breaking process   Rajiv Gandhi
      • [gmx-users] Hydrogen bond breaking process   Justin Lemkul
      • [gmx-users] Hydrogen bond breaking process   Peter C. Lai
      • [gmx-users] Hydrogen bond breaking process   Rajiv Gandhi
• [gmx-users] Reminder: vermaprakash38 at gmail.com wants to follow you   vermaprakash38 at gmail.com
• [gmx-users] periodicity in msd calculation   Bala subramanian
  • [gmx-users] periodicity in msd calculation   Mark Abraham
    • [gmx-users] On creating pdb file using dynamic indices from g_select   Mr Bernard Ramos
      • [gmx-users] On creating pdb file using dynamic indices from g_select   Mark Abraham
• [gmx-users] au virtual site   fatemeh ramezani
  • [gmx-users] au virtual site   Justin Lemkul
• [gmx-users] What is gbsa.itp in oplsaa of gmx4.5.5?   Wu Chaofu
  • [gmx-users] What is gbsa.itp in oplsaa of gmx4.5.5?   Justin Lemkul
• [gmx-users] g_sas doubt -reg   venkatesh s
  • [gmx-users] g_sas doubt -reg   Justin Lemkul
• [gmx-users] g_mindist - reg   Raj
  • [gmx-users] g_mindist - reg   Justin Lemkul
    • [gmx-users] Re: g_mindist - reg   Raj
      • [gmx-users] Re: g_mindist - reg   Justin Lemkul
• [gmx-users] au virtual atom   fatemeh ramezani
  • [gmx-users] au virtual atom   Justin Lemkul
• [gmx-users] Adding phosphate to protein   reisingere at rostlab.informatik.tu-muenchen.de
  • [gmx-users] Adding phosphate to protein   Peter C. Lai
    • [gmx-users] Adding phosphate to protein   reisingere at rostlab.informatik.tu-muenchen.de
      • [gmx-users] Adding phosphate to protein   Peter C. Lai
      • [gmx-users] Adding phosphate to protein   reisingere at rostlab.informatik.tu-muenchen.de
      • [gmx-users] Adding phosphate to protein   Peter C. Lai
      • AW: [gmx-users] Adding phosphate to protein   Rausch, Felix
• [gmx-users] puzzling about ffnonbonded.itp   Wu Chaofu
  • [gmx-users] puzzling about ffnonbonded.itp   Mark Abraham
• [gmx-users] g_tune_pme cannot be executed   Carsten Kutzner
• [gmx-users] g_tune_pme for multiple nodes   Carsten Kutzner
• [gmx-users] how to optimize performance of IBM Power 775?   Carsten Kutzner
• [gmx-users] Is there a way to redirect utility output to the screen, rather than to a file?   Andrew DeYoung
  • [gmx-users] Is there a way to redirect utility output to the screen, rather than to a file?   Peter C. Lai
• [gmx-users] question about aminoacids.rtp file when adding a new residue   reisingere at rostlab.informatik.tu-muenchen.de
  • [gmx-users] question about aminoacids.rtp file when adding a new residue   Justin Lemkul
    • [gmx-users] question about aminoacids.rtp file when adding a new residue   reisingere at rostlab.informatik.tu-muenchen.de
      • [gmx-users] question about aminoacids.rtp file when adding a new residue   Justin Lemkul
• [gmx-users] adding hydrogens to protein with pdb2gmx   reisingere at rostlab.informatik.tu-muenchen.de
  • [gmx-users] adding hydrogens to protein with pdb2gmx   Justin Lemkul
    • [gmx-users] adding hydrogens to protein with pdb2gmx   Marcelo Depolo
      • [gmx-users] adding hydrogens to protein with pdb2gmx   reisingere at rostlab.informatik.tu-muenchen.de
      • [gmx-users] adding hydrogens to protein with pdb2gmx   reisingere at rostlab.informatik.tu-muenchen.de
      • [gmx-users] adding hydrogens to protein with pdb2gmx   Justin Lemkul
      • [gmx-users] adding hydrogens to protein with pdb2gmx   Marcelo Depolo
      • [gmx-users] adding hydrogens to protein with pdb2gmx   reisingere at rostlab.informatik.tu-muenchen.de
    • [gmx-users] adding hydrogens to protein with pdb2gmx   reisingere at rostlab.informatik.tu-muenchen.de
• [gmx-users] Effect of refcoord_scaling   Matthias Ernst
• [gmx-users] job restart error   Albert
  • [gmx-users] job restart error   Justin Lemkul
    • [gmx-users] job restart error   Albert
      • [gmx-users] job restart error   Justin Lemkul
      • [gmx-users] job restart error   Albert
• [gmx-users] ParmBSC0 Force Field Contribution   Thomas Piggot
• [gmx-users] MD problem with nwall=2   김현식
  • [gmx-users] MD problem with nwall=2   Peter C. Lai
    • [gmx-users] MD problem with nwall=2   Bogdan Costescu
      • [gmx-users] MD problem with nwall=2   Peter C. Lai
• [gmx-users] Effect of refcoord_scaling   Christopher Neale
  • [gmx-users] Effect of refcoord_scaling   Matthias Ernst
    • [gmx-users] Effect of refcoord_scaling   Erik Marklund
      • [gmx-users] Effect of refcoord_scaling   Matthias Ernst
• [gmx-users] Effect of refcoord_scaling   Christopher Neale
• [gmx-users] using martinize.py to martinize two chains complex   Lingyun Wang
  • [gmx-users] using martinize.py to martinize two chains complex   XAvier Periole
    • [gmx-users] using martinize.py to martinize two chains complex   Lingyun Wang
      • [gmx-users] using martinize.py to martinize two chains complex   XAvier Periole
      • [gmx-users] using martinize.py to martinize two chains complex   Lingyun Wang
• [gmx-users] GROMOS angle type ga_13 or ga_15?   nikpap
• [gmx-users] Ligand Internal energy   Tom Dupree
  • [gmx-users] Ligand Internal energy   Marcelo Depolo
    • [gmx-users] Ligand Internal energy   Mark Abraham
      • [gmx-users] Ligand Internal energy   Marcelo Depolo
      • [gmx-users] Ligand Internal energy   Mark Abraham
  • [gmx-users] Ligand Internal energy   Mark Abraham
    • [gmx-users] Re: Ligand Internal energy   Tom Dupree
• [gmx-users] Calculating number of water molecules involves between dimer protein.   Rajiv Gandhi
  • [gmx-users] Calculating number of water molecules involves between dimer protein.   Mark Abraham
    • [gmx-users] Calculating number of water molecules involves between dimer protein.   lloyd riggs
• [gmx-users] configurations of the two dimensional simulation   Clare
• [gmx-users] minimisation with protonated residues   reisingere at rostlab.informatik.tu-muenchen.de
  • [gmx-users] minimisation with protonated residues   Justin Lemkul
    • [gmx-users] minimisation with protonated residues   reisingere at rostlab.informatik.tu-muenchen.de
      • [gmx-users] minimisation with protonated residues   Justin Lemkul
• [gmx-users] Effect of refcoord_scaling   Christopher Neale
  • [gmx-users] Effect of refcoord_scaling   Matthias Ernst
• [gmx-users] Effect of refcoord_scaling   Christopher Neale
• [gmx-users] The .pdb file compatible with structure of .itp file,   Ali Alizadeh
  • [gmx-users] The .pdb file compatible with structure of .itp file,   Justin Lemkul
• [gmx-users] The .pdb file compatible with structure of .itp file,   Christopher Neale
• [gmx-users] The .pdb file compatible with structure of .itp file,   Ali Alizadeh
  • [gmx-users] The .pdb file compatible with structure of .itp file,   Justin Lemkul
  • Fwd: [gmx-users] The .pdb file compatible with structure of .itp file,   Ali Alizadeh
• [gmx-users] Re: gmx-users Digest, Vol 101, Issue 17   Ali Alizadeh
• [gmx-users] a box of water   Turgay Cakmak
  • [gmx-users] a box of water   Justin Lemkul
    • [gmx-users] a box of water   Turgay Cakmak
• [gmx-users] .gro file format details   Julio Dominguez
  • [gmx-users] .gro file format details   Justin Lemkul
• [gmx-users] from GMX to NAMD/Amber   Steven Neumann
• [gmx-users] Energies in simulation and rerun using different core counts   Richard Broadbent
• [gmx-users] Re: .gro file format details   Julio Dominguez
• [gmx-users] Automatic calculations of forces in tabulated potentials?   Wu Chaofu
  • [gmx-users] Automatic calculations of forces in tabulated potentials?   David van der Spoel
• [gmx-users] error in producing top file for a structure   Elie M
  • [gmx-users] error in producing top file for a structure   Justin Lemkul
    • [gmx-users] error in producing top file for a structure   Elie M
      • [gmx-users] error in producing top file for a structure   Justin Lemkul
      • [gmx-users] error in producing top file for a structure   Elie M
• [gmx-users] How to delete atoms during MD runs?   Yun Shi
  • [gmx-users] How to delete atoms during MD runs?   Mark Abraham
    • [gmx-users] How to delete atoms during MD runs?   Yun Shi
      • [gmx-users] How to delete atoms during MD runs?   Mark Abraham
• [gmx-users] (no subject)   niaz poorgholami
• [gmx-users] gold nanoparticle simulation,use pbc or not?   fatemeh ramezani
• [gmx-users] genion problem with divalent ions   Matthias Ernst
  • [gmx-users] genion problem with divalent ions   Justin Lemkul
  • [gmx-users] genion problem with divalent ions   Leandro Bortot
• [gmx-users] Topology generated of a dimer protein   Shima Arasteh
  • [gmx-users] Topology generated of a dimer protein   Justin Lemkul
• [gmx-users] Variation of angles of simulation cell - regd   ramesh cheerla
  • [gmx-users] Variation of angles of simulation cell - regd   Mark Abraham
    • [gmx-users] Variation of angles of simulation cell - regd   ramesh cheerla
      • [gmx-users] Variation of angles of simulation cell - regd   Mark Abraham
      • [gmx-users] Variation of angles of simulation cell - regd   ramesh cheerla
• [gmx-users] how to measure distance between two helix?   Albert
  • [gmx-users] how to measure distance between two helix?   Justin Lemkul
• [gmx-users] Re: genion problem with divalent ions   ran friedman
• [gmx-users] -ee option in the g_analyze   leila karami
• [gmx-users] umbrella sampling (PMF) position discrepancy   Raphael Alhadeff
  • [gmx-users] umbrella sampling (PMF) position discrepancy   Justin Lemkul
    • [gmx-users] umbrella sampling (PMF) position discrepancy   Raphael Alhadeff
      • [gmx-users] umbrella sampling (PMF) position discrepancy   Jianguo Li
      • [gmx-users] umbrella sampling (PMF) position discrepancy   Justin Lemkul
      • [gmx-users] umbrella sampling (PMF) position discrepancy   Raphael Alhadeff
  • [gmx-users] Re: umbrella sampling (PMF) position discrepancy   Sheeba
• [gmx-users] Different initial conditions for the membrane protein simulation   James Starlight
  • [gmx-users] Different initial conditions for the membrane protein simulation   Mark Abraham
    • [gmx-users] Different initial conditions for the membrane protein simulation   James Starlight
• [gmx-users] Charge Group Number in itp File (cgnr)   Andrew DeYoung
  • [gmx-users] Charge Group Number in itp File (cgnr)   Mark Abraham
• [gmx-users] gold nanoparticle simulation,use pbc or not?   Christopher Neale
• [gmx-users] create topology other solvent   Nur Syafiqah Abdul Ghani
  • [gmx-users] create topology other solvent   Mark Abraham
• [gmx-users] How to determin the simulation time   xiaojing gong
  • [gmx-users] How to determin the simulation time   Mark Abraham
  • [gmx-users] Re: How to determin the simulation time   xiaojing gong
• [gmx-users] time constant in V-rescale algorithm   xiaojing gong
  • [gmx-users] time constant in V-rescale algorithm   Mark Abraham
  • [gmx-users] Re: time constant in V-rescale algorithm   xiaojing gong
• [gmx-users] Rotational time correlation function - regd   ramesh cheerla
• [gmx-users] Rotational correlation function - regd   ramesh cheerla
• [gmx-users] On the usage of the Noose-Hover chains   James Starlight
• [gmx-users] strange continued jobs   Albert
  • [gmx-users] strange continued jobs   Justin Lemkul
    • [gmx-users] strange continued jobs   Albert
• [gmx-users] Orientation of protein   Shima Arasteh
  • [gmx-users] Orientation of protein   Jianguo Li
    • [gmx-users] Orientation of protein   Shima Arasteh
• [gmx-users] No molecules were defined in the system/ No such molecule type Dio   sarah k
  • [gmx-users] No molecules were defined in the system/ No such molecule type Dio   Justin Lemkul
• [gmx-users] Instantaneous dipole moment of water molecule   Deepak Ojha
• [gmx-users] dihedraltypes amber forcefield   reisingere at rostlab.informatik.tu-muenchen.de
  • [gmx-users] dihedraltypes amber forcefield   Justin Lemkul
• [gmx-users] Orientation of protein   Shima Arasteh
  • [gmx-users] Orientation of protein   Justin Lemkul
• [gmx-users] LINCS warning in md run   reisingere at rostlab.informatik.tu-muenchen.de
  • [gmx-users] LINCS warning in md run   Justin Lemkul
    • [gmx-users] LINCS warning in md run   reisingere at rostlab.informatik.tu-muenchen.de
      • [gmx-users] LINCS warning in md run   Justin Lemkul
      • [gmx-users] LINCS warning in md run   reisingere at rostlab.informatik.tu-muenchen.de
      • [gmx-users] LINCS warning in md run   Justin Lemkul
      • [gmx-users] LINCS warning in md run   reisingere at rostlab.informatik.tu-muenchen.de
      • [gmx-users] LINCS warning in md run   Justin Lemkul
      • [gmx-users] LINCS warning in md run   reisingere at rostlab.informatik.tu-muenchen.de
      • [gmx-users] LINCS warning in md run   Justin Lemkul
      • [gmx-users] LINCS warning in md run   Peter C. Lai
      • [gmx-users] LINCS warning in md run   Justin Lemkul
      • [gmx-users] LINCS warning in md run   reisingere at rostlab.informatik.tu-muenchen.de
      • [gmx-users] LINCS warning in md run   Justin Lemkul
      • [gmx-users] LINCS warning in md run   reisingere at rostlab.informatik.tu-muenchen.de
      • [gmx-users] LINCS warning in md run   Justin Lemkul
      • [gmx-users] LINCS warning in md run   reisingere at rostlab.informatik.tu-muenchen.de
• [gmx-users] Published articles which have used Gromcas for their work   Mohsen Ramezanpour
  • [gmx-users] Published articles which have used Gromcas for their work   Mark Abraham
• [gmx-users] Re: freeze value   Justin Lemkul
• [gmx-users] Smaller Area Per Lipid for DPPC Bilayer   David Ackerman
  • [gmx-users] Smaller Area Per Lipid for DPPC Bilayer   Justin Lemkul
    • [gmx-users] Smaller Area Per Lipid for DPPC Bilayer   Thomas Piggot
    • [gmx-users] Smaller Area Per Lipid for DPPC Bilayer   David Ackerman
      • [gmx-users] Smaller Area Per Lipid for DPPC Bilayer   Thomas Piggot
      • [gmx-users] Smaller Area Per Lipid for DPPC Bilayer   Justin Lemkul
      • [gmx-users] Smaller Area Per Lipid for DPPC Bilayer   David Ackerman
• [gmx-users] Calculating tertiary structure rotation   Rajiv
  • [gmx-users] Calculating tertiary structure rotation   Mark Abraham
• [gmx-users] About Bond breaking and usage of constraints   vidhya sankar
  • [gmx-users] Re: About Bond breaking and usage of constraints   Justin Lemkul
• [gmx-users] Smaller Area Per Lipid for DPPC Bilayer   Christopher Neale
  • [gmx-users] Smaller Area Per Lipid for DPPC Bilayer   Thomas Piggot
• [gmx-users] Error regarding topology and coordinate files   Bharath K. Srikanth
  • [gmx-users] Error regarding topology and coordinate files   Justin Lemkul
• [gmx-users] How to create two parallel wall?   Ali Alizadeh
  • [gmx-users] How to create two parallel wall?   Alex Marshall
• [gmx-users] Calculating secondary structure movements   Rajiv Gandhi
• [gmx-users] Resuming of calculation from last *.cpt   James Starlight
  • [gmx-users] Resuming of calculation from last *.cpt   Justin Lemkul
    • [gmx-users] Resuming of calculation from last *.cpt   James Starlight
      • [gmx-users] Resuming of calculation from last *.cpt   Justin Lemkul
      • [gmx-users] Resuming of calculation from last *.cpt   James Starlight
      • [gmx-users] Resuming of calculation from last *.cpt   Justin Lemkul
      • [gmx-users] Resuming of calculation from last *.cpt   James Starlight
      • [gmx-users] Resuming of calculation from last *.cpt   Justin Lemkul
      • [gmx-users] Resuming of calculation from last *.cpt   James Starlight
      • [gmx-users] Resuming of calculation from last *.cpt   Justin Lemkul
      • [gmx-users] Resuming of calculation from last *.cpt   Mark Abraham
      • [gmx-users] Resuming of calculation from last *.cpt   James Starlight
      • [gmx-users] Resuming of calculation from last *.cpt   Justin Lemkul
      • [gmx-users] Resuming of calculation from last *.cpt   Rajiv Gandhi
• [gmx-users] Fatal error during lipid bilayer minimization   Bharath K. Srikanth
  • [gmx-users] Fatal error during lipid bilayer minimization   Mark Abraham
• [gmx-users] g_covar -reg   venkatesh s
• [gmx-users] Charmm for Proteins   Steven Neumann
  • [gmx-users] Charmm for Proteins   Peter C. Lai
• [gmx-users] Reg pdb2gmx for Cyclic peptide   vidhya sankar
  • [gmx-users] Reg pdb2gmx for Cyclic peptide   Justin Lemkul
• [gmx-users] .xtc support in UCSF Chimera   Eric Pettersen
• [gmx-users] CfP: 3rd International Workshop on Model-driven Approaches for Simulation Engineering (Mod4Sim13) part of the Symposium on Theory of Modeling and Simulation SCS SpringSim 2013)   Daniele Gianni
• [gmx-users] Segmentation fault (core dumped error)   Elie M
  • [gmx-users] Segmentation fault (core dumped error)   Justin Lemkul
    • [gmx-users] Segmentation fault (core dumped error)   Elie M
• [gmx-users] Re: No molecules were defined in the system/ No such molecule type   sarah k
  • [gmx-users] Re: No molecules were defined in the system/ No such molecule type   Justin Lemkul
• [gmx-users] Pdb2gmx for cyclic Peptide   vidhya sankar
  • [gmx-users] Pdb2gmx for cyclic Peptide   Justin Lemkul
• [gmx-users] Re: Umbrella Sampling Pull code Problem - Follow-Up   Steinbrecher, Thomas (IPC)
• [gmx-users] does anybody knows how to use CTMD for gromacs trajectories?   Albert
• [gmx-users] About pdb2gmx for cyclic pepetide   vidhya sankar
  • [gmx-users] About pdb2gmx for cyclic pepetide   Mark Abraham
• [gmx-users] Rotated protein   Shima Arasteh
  • [gmx-users] Rotated protein   Mark Abraham
    • [gmx-users] Rotated protein   Shima Arasteh
      • [gmx-users] Rotated protein   Mark Abraham
      • [gmx-users] Rotated protein   Shima Arasteh
      • [gmx-users] Rotated protein   Erik Marklund
      • [gmx-users] Rotated protein   Shima Arasteh
• [gmx-users] lipid.itp file CHARMM FF   Shima Arasteh
  • [gmx-users] lipid.itp file CHARMM FF   Mark Abraham
• [gmx-users] About EM for Cyclic Peptide   vidhya sankar
  • [gmx-users] About EM for Cyclic Peptide   Justin Lemkul
• [gmx-users] energy minimisation of carbon nanotubes.   Elie M
  • [gmx-users] energy minimisation of carbon nanotubes.   Justin Lemkul
    • [gmx-users] energy minimisation of carbon nanotubes.   Elie M
      • [gmx-users] energy minimisation of carbon nanotubes.   Marcelo Depolo
• [gmx-users] g_nmtraj -temp   Joaquim Rui de Castro Rodrigues
• [gmx-users] g_confrms   Ankita naithani
  • [gmx-users] g_confrms   Mark Abraham
    • [gmx-users] g_confrms   Ankita naithani
      • [gmx-users] g_confrms   Mark Abraham
• [gmx-users] lipid-protein simulation   Shima Arasteh
  • [gmx-users] lipid-protein simulation   Justin Lemkul
    • [gmx-users] lipid-protein simulation   Shima Arasteh
      • [gmx-users] lipid-protein simulation   Justin Lemkul
• [gmx-users] About topology construction for yclic pepetide   vidhya sankar
  • [gmx-users] About topology construction for yclic pepetide   Mark Abraham
• [gmx-users] About topology construction for Cyclic peptide   vidhya sankar
  • [gmx-users] About topology construction for Cyclic peptide   Mark Abraham
• [gmx-users] Topology and mdp file for coupling vdw and coulombic interactions for running FE calculations using BAR   Sonia Milena Aguilera Segura
  • [gmx-users] Topology and mdp file for coupling vdw and coulombic interactions for running FE calculations using BAR   Justin Lemkul
    • [gmx-users] Re: Topology and mdp file for coupling vdw and coulombic interactions for running FE calculations using BAR   Sonia Aguilera
      • [gmx-users] Re: Topology and mdp file for coupling vdw and coulombic interactions for running FE calculations using BAR   Justin Lemkul
• [gmx-users] Regarding Pulling simulation:To study the base flipping of the thymine   bipin singh
• [gmx-users] Elastic Network Model -harmonic pot   mohan maruthi sena
• [gmx-users] permittivity value   Bala subramanian
• [gmx-users] visualize trajectory   Shima Arasteh
  • [gmx-users] visualize trajectory   Justin Lemkul
• [gmx-users] Regarding RMSD graph nalysis   naga sundar
  • [gmx-users] Regarding RMSD graph nalysis   Justin Lemkul
• [gmx-users] charge calculation........   tarak karmakar
  • [gmx-users] charge calculation........   Mark Abraham
    • [gmx-users] charge calculation........   tarak karmakar
      • [gmx-users] charge calculation........   Erik Marklund
• [gmx-users] charge calculation........   ABEL Stephane 175950
• [gmx-users] DNA MD PROBLEM   Anik Sen
  • [gmx-users] DNA MD PROBLEM   Justin Lemkul
• [gmx-users] Regarding Pulling simulation:To study the base flipping of the thymine   Christopher Neale
  • [gmx-users] Regarding Pulling simulation:To study the base flipping of the thymine   lloyd riggs
• [gmx-users] Decoupling non-bonded energies - regd   ramesh cheerla
• [gmx-users] make index groups with make_ndx   reisingere at rostlab.informatik.tu-muenchen.de
  • [gmx-users] make index groups with make_ndx   Peter C. Lai
    • [gmx-users] make index groups with make_ndx   reisingere at rostlab.informatik.tu-muenchen.de
• [gmx-users] Hbond-ETH-WATER   Praveen Kumar Sappidi
  • [gmx-users] Hbond-ETH-WATER   Justin Lemkul
• [gmx-users] why traj.trr appears   Dr. Vitaly Chaban
  • [gmx-users] why traj.trr appears   Justin Lemkul
    • [gmx-users] Re: why traj.trr appears   Dr. Vitaly Chaban
• [gmx-users] Hbond-ETH-WATER   Justin Lemkul
• [gmx-users] v-rescale   mohammad agha
  • [gmx-users] v-rescale   Tsjerk Wassenaar
  • [gmx-users] Re: v-rescale   Ladasky
    • [gmx-users] Re: v-rescale   Peter C. Lai
      • [gmx-users] Re: v-rescale   Ladasky
      • [gmx-users] Re: v-rescale   Peter C. Lai
      • [gmx-users] Re: v-rescale   Ladasky
      • [gmx-users] Re: v-rescale   ms
      • [gmx-users] Re: v-rescale   Mark Abraham
      • [gmx-users] Re: v-rescale   Michael Shirts
• [gmx-users] Re: gmx-users Digest, Vol 101, Issue 52   Praveen Kumar Sappidi
  • [gmx-users] Re: gmx-users Digest, Vol 101, Issue 52   Justin Lemkul
• [gmx-users] Issue with genbox   Bharath K. Srikanth
  • [gmx-users] Issue with genbox   Justin Lemkul
  • [gmx-users] Issue with genbox   Mark Abraham
  • [gmx-users] tau_t and tc_grps for v-rescale   Felipe Pineda, PhD
    • [gmx-users] tau_t and tc_grps for v-rescale (2)   Felipe Pineda, PhD
      • [gmx-users] tau_t and tc_grps for v-rescale (2)   Justin Lemkul
• [gmx-users] PDB and XYZ Structure Files in GROMACS   Lara Bunte
  • [gmx-users] PDB and XYZ Structure Files in GROMACS   Justin Lemkul
    • [gmx-users] PDB and XYZ Structure Files in GROMACS   Lara Bunte
• [gmx-users] How to generate a .itp file for molecules?   Ali Alizadeh
  • [gmx-users] How to generate a .itp file for molecules?   Justin Lemkul
• [gmx-users] Regarding Pulling simulation:To study the base flipping of the thymine   Christopher Neale
• [gmx-users] Re: gmx-users Digest, Vol 101, Issue 56   Ali Alizadeh
• [gmx-users] Residue 'UNK' not found in residue topology database   SIMONE BROGI
  • [gmx-users] Residue 'UNK' not found in residue topology database   Justin Lemkul
    • [gmx-users] Residue 'UNK' not found in residue topology database   naga sundar
      • [gmx-users] Residue 'UNK' not found in residue topology database   Justin Lemkul
• [gmx-users] Re: How to generate a .itp file for molecules   Ali Alizadeh
  • [gmx-users] Re: How to generate a .itp file for molecules   Justin Lemkul
• [gmx-users] DelG of LJ Transformation Negative Glu--->Ala Mutation   Sai Kumar Ramadugu
• [gmx-users] use of PRODRG   Elie M
  • [gmx-users] use of PRODRG   Justin Lemkul
    • [gmx-users] use of PRODRG   Elie M
      • [gmx-users] use of PRODRG   Justin Lemkul
      • [gmx-users] use of PRODRG   Elie M
• [gmx-users] Extracting bond information from topol.tpr file using template.c   Amit Shavit
  • [gmx-users] Extracting bond information from topol.tpr file using template.c   Peter C. Lai
  • [gmx-users] Extracting bond information from topol.tpr file using template.c   Peter C. Lai
  • [gmx-users] Extracting bond information from topol.tpr file using template.c   Mark Abraham
    • [gmx-users] Extracting bond information from topol.tpr file using template.c   Tsjerk Wassenaar
      • [gmx-users] Extracting bond information from topol.tpr file using template.c   Mark Abraham
    • [gmx-users] Extracting bond information from topol.tpr file using template.c   Erik Marklund
• [gmx-users] Is it possible adding new atomtype to force fields?   Ali Alizadeh
  • [gmx-users] Is it possible adding new atomtype to force fields?   Justin Lemkul
• [gmx-users] Energy Minimization of Alanin   Lara Bunte
  • [gmx-users] Energy Minimization of Alanin   Justin Lemkul
  • [gmx-users] Energy Minimization of Alanin   Peter C. Lai
    • [gmx-users] Energy Minimization of Alanin   Lara Bunte
• [gmx-users] About Energy Minimisation   vidhya sankar
• [gmx-users] How to a .gro file generated from this .top file?   Ali Alizadeh
  • [gmx-users] How to a .gro file generated from this .top file?   Mark Abraham
• [gmx-users] Ligand-Protein interaction with energy groups   이종화
  • [gmx-users] Ligand-Protein interaction with energy groups   Justin Lemkul
• [gmx-users] Equilibration Water around Alanin - Problem with Names   Lara Bunte
  • [gmx-users] Equilibration Water around Alanin - Problem with Names   Justin Lemkul
• [gmx-users] Theoretical questions about cut-offs and neighbor searching   Lara Bunte
  • [gmx-users] Theoretical questions about cut-offs and neighbor searching   Justin Lemkul
• [gmx-users] water dynamics   Eduardo Oliveira
  • [gmx-users] water dynamics   Justin Lemkul
• [gmx-users] distance calculation   tarak karmakar
  • [gmx-users] distance calculation   Justin Lemkul
    • [gmx-users] distance calculation   tarak karmakar
      • [gmx-users] distance calculation   Mark Abraham
      • [gmx-users] distance calculation   tarak karmakar
      • [gmx-users] distance calculation   Mark Abraham
      • [gmx-users] distance calculation   tarak karmakar
• [gmx-users] water dynamics   Justin Lemkul
• [gmx-users] Water molecules cannot be settled: V-rescale is the cause   Ladasky
  • [gmx-users] Water molecules cannot be settled: V-rescale is the cause   Justin Lemkul
    • [gmx-users] Re: Water molecules cannot be settled: V-rescale is the cause   Ladasky
      • [gmx-users] Re: Water molecules cannot be settled: V-rescale is the cause   Mark Abraham
  • [gmx-users] Water molecules cannot be settled: V-rescale is the cause   Mark Abraham
    • [gmx-users] Re: Water molecules cannot be settled: V-rescale is the cause   Ladasky
      • [gmx-users] Re: Water molecules cannot be settled: V-rescale is the cause   Mark Abraham
• [gmx-users] How to produce the photodissociation in Gromacs?   Rajiv Gandhi
  • [gmx-users] How to produce the photodissociation in Gromacs?   Mark Abraham
    • [gmx-users] How to produce the photodissociation in Gromacs?   Rajiv Gandhi
• [gmx-users] problem pdb2gmx and acetylation   menica dibenedetto
  • [gmx-users] problem pdb2gmx and acetylation   Justin Lemkul
    • [gmx-users] problem pdb2gmx and acetylation   menica dibenedetto
• [gmx-users] Problem in atom typing for Nitro group using CHARMM27   Archana Sonawani
• [gmx-users] How to create a box of molecules with three layer?   Ali Alizadeh
  • [gmx-users] How to create a box of molecules with three layer?   Justin Lemkul
• [gmx-users] Some tips for decreasing CPU time for mdrun -rerun   Wu Chaofu
  • [gmx-users] Some tips for decreasing CPU time for mdrun -rerun   Mark Abraham
• [gmx-users] specific dihedral plotting   tarak karmakar
  • [gmx-users] specific dihedral plotting   Mark Abraham
    • [gmx-users] specific dihedral plotting   tarak karmakar
• [gmx-users] Analysis of enssemble of MD trajectories   James Starlight
  • [gmx-users] Analysis of enssemble of MD trajectories   Justin Lemkul
  • [gmx-users] Analysis of enssemble of MD trajectories   lloyd riggs
    • [gmx-users] Analysis of enssemble of MD trajectories   James Starlight
      • [gmx-users] Analysis of enssemble of MD trajectories   francesco oteri
      • [gmx-users] Analysis of enssemble of MD trajectories   Justin Lemkul
      • [gmx-users] Analysis of enssemble of MD trajectories   James Starlight
• [gmx-users] Specifics on tabulated pair potentials   MURAT OZTURK
• [gmx-users] Re: gmx-users Digest, Vol 101, Issue 67   Ali Alizadeh
  • [gmx-users] How to create a box of molecules with three layers?   Justin Lemkul
• [gmx-users] Re: gmx-users Digest, Vol 101, Issue 68   Ali Alizadeh
  • [gmx-users] How to create a box of molecules with three layers?   Justin Lemkul
• [gmx-users] tutorial for liquid-solid simulation   cuong nguyen
  • [gmx-users] tutorial for liquid-solid simulation   Justin Lemkul
• [gmx-users] Elastic network model   mohan maruthi sena
• [gmx-users] hi   marzieh dehghan
  • [gmx-users] hi   Shima Arasteh
• [gmx-users] Problems in mdrun - CHARMM27   Lara Bunte
  • [gmx-users] Problems in mdrun - CHARMM27   Justin Lemkul
• [gmx-users] CHARMM27 Equilibrating Settings   Lara Bunte
  • [gmx-users] CHARMM27 Equilibrating Settings   Peter Lai
• [gmx-users] Input/output error in GROMACS   Elie M
  • [gmx-users] Input/output error in GROMACS   Justin Lemkul
• [gmx-users] Photodissociation through MD   Rajiv Gandhi
  • [gmx-users] Photodissociation through MD   Justin Lemkul
  • [gmx-users] Photodissociation through MD   Mark Abraham
    • [gmx-users] Photodissociation through MD   francesco oteri
• [gmx-users] why the output of g_saltbr is so large?   Albert
  • [gmx-users] why the output of g_saltbr is so large?   francesco oteri
    • [gmx-users] why the output of g_saltbr is so large?   Albert
      • [gmx-users] why the output of g_saltbr is so large?   francesco oteri
      • [gmx-users] why the output of g_saltbr is so large?   Justin Lemkul
• [gmx-users] Possible bug in the temperature calculation from rerun   Bastien Loubet
  • [gmx-users] Possible bug in the temperature calculation from rerun   Justin Lemkul
    • [gmx-users] Re: Possible bug in the temperature calculation from rerun   Bastien Loubet
      • [gmx-users] Re: Possible bug in the temperature calculation from rerun   Mark Abraham
• [gmx-users] diffusion   mohammad agha
• [gmx-users] select randomly some of my moleculesand replace them,   Ali Alizadeh
  • [gmx-users] select randomly some of my moleculesand replace them,   Erik Marklund
• [gmx-users] Water molecule can not be settled - mdrun error   Lara Bunte
  • [gmx-users] Water molecule can not be settled - mdrun error   Justin Lemkul
    • [gmx-users] Water molecule can not be settled - mdrun error   Lara Bunte
      • [gmx-users] Water molecule can not be settled - mdrun error   Justin Lemkul
      • [gmx-users] Water molecule can not be settled - mdrun error   Lara Bunte
      • [gmx-users] Water molecule can not be settled - mdrun error   Justin Lemkul
      • [gmx-users] Water molecule can not be settled - mdrun error   Peter C. Lai
      • [gmx-users] Water molecule can not be settled - mdrun error   Lara Bunte
• [gmx-users] monomer to dimer   Hossein Lanjanian
  • [gmx-users] monomer to dimer   Justin Lemkul
    • [gmx-users] monomer to dimer   Hossein Lanjanian
• [gmx-users] GridMAT   Shima Arasteh
  • [gmx-users] GridMAT   Justin Lemkul
• [gmx-users] TIP4P water model   Ankita naithani
  • [gmx-users] TIP4P water model   Peter C. Lai
    • [gmx-users] TIP4P water model   Justin Lemkul
      • [gmx-users] TIP4P water model   Ankita naithani
      • [gmx-users] TIP4P water model   Justin Lemkul
• [gmx-users] Gromos force fields and simulation of the alpha-helices membrane proteins   James Starlight
  • [gmx-users] Gromos force fields and simulation of the alpha-helices membrane proteins   Justin Lemkul
    • [gmx-users] Gromos force fields and simulation of the alpha-helices membrane proteins   James Starlight
      • [gmx-users] Gromos force fields and simulation of the alpha-helices membrane proteins   James Starlight
      • [gmx-users] Gromos force fields and simulation of the alpha-helices membrane proteins   Justin Lemkul
• [gmx-users] About Presence of Bond In Topology   vidhya sankar
  • [gmx-users] About Presence of Bond In Topology   Peter C. Lai
• [gmx-users] Re: segentation fault -core dumped   Keerthana S.P Periasamy
  • [gmx-users] Re: segentation fault -core dumped   Justin Lemkul
• [gmx-users] Visualizing the system   Shima Arasteh
  • [gmx-users] Visualizing the system   Peter C. Lai
    • [gmx-users] Visualizing the system   Shima Arasteh
      • [gmx-users] Visualizing the system   Shima Arasteh
• [gmx-users] About Bond in Topology   vidhya sankar
  • [gmx-users] About Bond in Topology   Peter C. Lai
  • [gmx-users] About Bond in Topology   Peter C. Lai
• [gmx-users] Strong position restrain   Shima Arasteh
  • [gmx-users] Strong position restrain   Peter C. Lai
    • [gmx-users] Strong position restrain   Shima Arasteh
• [gmx-users] force field parameters   Asaf Farhi
  • [gmx-users] force field parameters   Justin Lemkul
    • [gmx-users] force field parameters   Asaf Farhi
      • [gmx-users] force field parameters   Justin Lemkul
• [gmx-users] Domain decomposition error, is mdrun_mpi now obsolete?   Ladasky
  • [gmx-users] Domain decomposition error, is mdrun_mpi now obsolete?   Justin Lemkul
  • [gmx-users] Domain decomposition error, is mdrun_mpi now obsolete?   Peter C. Lai
• [gmx-users] grompp warnings "Overriding atomtype ..."   Leandro Bortot
  • [gmx-users] grompp warnings "Overriding atomtype ..."   Justin Lemkul
• [gmx-users] i have not atomtype K in my input files,   Ali Alizadeh
  • [gmx-users] i have not atomtype K in my input files,   Justin Lemkul
• [gmx-users] InflateGro methodology   Shima Arasteh
  • [gmx-users] InflateGro methodology   Peter C. Lai
    • [gmx-users] InflateGro methodology   Shima Arasteh
• [gmx-users] elastic network model - normal mode analysis   mohan maruthi sena
  • [gmx-users] elastic network model - normal mode analysis   Mark Abraham
• [gmx-users] About Warning in grompp   vidhya sankar
  • [gmx-users] About Warning in grompp   Justin Lemkul
• [gmx-users] pca-based MD   James Starlight
  • [gmx-users] pca-based MD   Thomas Evangelidis
    • [gmx-users] pca-based MD   James Starlight
      • [gmx-users] pca-based MD   Thomas Evangelidis
      • [gmx-users] pca-based MD   James Starlight
      • [gmx-users] pca-based MD   Thomas Evangelidis
      • [gmx-users] pca-based MD   James Starlight
      • [gmx-users] pca-based MD   James Starlight
      • [gmx-users] pca-based MD   James Starlight
• [gmx-users] PCA comparison between two simulations   francesco oteri
  • [gmx-users] PCA comparison between two simulations   Thomas Evangelidis
• [gmx-users] force field parameters   Justin Lemkul
• FW: [gmx-users] force field parameters   Asaf Farhi
• [gmx-users] rapid change in angles of simulation cell - regd   ramesh cheerla
• [gmx-users] gromac-4.5.5 installation error   Pawan Raghav
• [gmx-users] Missing charges in a .gro file   Elie M
  • [gmx-users] Missing charges in a .gro file   Terry
    • [gmx-users] Missing charges in a .gro file   Elie M
• [gmx-users] Fast exchanges for REMD   Andreas Zink
  • [gmx-users] Fast exchanges for REMD   Mark Abraham
  • [gmx-users] Re: Fast exchanges for REMD   Andreas Zink
    • [gmx-users] Re: Fast exchanges for REMD   Michael Shirts
• [gmx-users] excess use of suplhate ions   Arunima Kumar
  • [gmx-users] excess use of suplhate ions   Justin Lemkul
• [gmx-users] content of secondary structure output file   ahmet yıldırım
  • [gmx-users] content of secondary structure output file   Justin Lemkul
• [gmx-users] how to assign protonation sate at pH-8?   Albert
  • [gmx-users] how to assign protonation sate at pH-8?   Justin Lemkul
• [gmx-users] exclude vdw interactions for pair of residues   Shreyas Supekar
  • [gmx-users] exclude vdw interactions for pair of residues   Justin Lemkul
• [gmx-users] packing lipids   Shima Arasteh
  • [gmx-users] packing lipids   Justin Lemkul
    • [gmx-users] packing lipids   Shima Arasteh
      • [gmx-users] packing lipids   Justin Lemkul
      • [gmx-users] packing lipids   Shima Arasteh
      • [gmx-users] packing lipids   Peter C. Lai
      • [gmx-users] packing lipids   Shima Arasteh
• [gmx-users] Regarding RMSD analysis result   naga sundar
  • [gmx-users] Regarding RMSD analysis result   Justin Lemkul
    • [gmx-users] Regarding RMSD analysis result   naga sundar
      • [gmx-users] Regarding RMSD analysis result   Justin Lemkul
      • [gmx-users] Regarding RMSD analysis result   lloyd riggs
      • [gmx-users] Regarding RMSD analysis result   Tsjerk Wassenaar
      • [gmx-users] Regarding RMSD analysis result   ahmet yıldırım
      • [gmx-users] Regarding RMSD analysis result   naga sundar
      • [gmx-users] Regarding RMSD analysis result   Felipe Pineda, PhD
      • [gmx-users] Regarding RMSD analysis result   naga sundar
      • [gmx-users] Regarding RMSD analysis result   Felipe Pineda, PhD
      • [gmx-users] Regarding RMSD analysis result   Archana Sonawani
      • [gmx-users] Regarding RMSD analysis result   ahmet yıldırım
      • [gmx-users] Regarding RMSD analysis result   Tsjerk Wassenaar
• [gmx-users] Re:Re: exclude vdw interactions for pair of residues   Shreyas Supekar
• [gmx-users] About mdrun -nt number   Lara Bunte
  • [gmx-users] About mdrun -nt number   Peter C. Lai
    • [gmx-users] About mdrun -nt number   Lara Bunte
      • [gmx-users] About mdrun -nt number   Peter C. Lai
      • [gmx-users] About mdrun -nt number   Lara Bunte
      • [gmx-users] About mdrun -nt number   Peter C. Lai
• [gmx-users] Meaning of Table Size   Lara Bunte
• [gmx-users] Water molecule can not be settled - mdrun error   Peter C. Lai
  • [gmx-users] Water molecule can not be settled - mdrun error   Lara Bunte
    • [gmx-users] Water molecule can not be settled - mdrun error   Peter C. Lai
      • [gmx-users] Water molecule can not be settled - mdrun error   Lara Bunte
      • [gmx-users] Water molecule can not be settled - mdrun error   Peter C. Lai
      • [gmx-users] Water molecule can not be settled - mdrun error   Justin Lemkul
      • [gmx-users] Water molecule can not be settled - mdrun error   Peter C. Lai
      • [gmx-users] Water molecule can not be settled - mdrun error   Lara Bunte
      • [gmx-users] Water molecule can not be settled - mdrun error   Justin Lemkul
• [gmx-users] The Futility of Validating OPLS Parameters for an Organic Cation   Chris Ing
• [gmx-users] adding mix solvent   Nur Syafiqah Abdul Ghani
  • [gmx-users] adding mix solvent   Masumeh Asman
• [gmx-users] elastic network model - atoms movement   mohan maruthi sena
• [gmx-users] Installation in a SGI Cluster   Diego Nolasco
  • [gmx-users] Installation in a SGI Cluster   Peter C. Lai
• [gmx-users] i can not simulate box of water,   Ali Alizadeh
  • [gmx-users] i can not simulate box of water,   Justin Lemkul
• [gmx-users] Reference for CHARMM36 Force Field Conversion   Thomas Piggot
• [gmx-users] Error in domain decomposition   Dipankar Roy
  • [gmx-users] Error in domain decomposition   Justin Lemkul
• [gmx-users] error with x2top.   Elie M
  • [gmx-users] error with x2top.   Justin Lemkul
    • [gmx-users] error with x2top.   Elie M
      • [gmx-users] error with x2top.   Justin Lemkul
      • [gmx-users] error with x2top.   Elie M
      • [gmx-users] a quick question (forgot to ask).   Elie M
      • [gmx-users] a quick question (forgot to ask).   Justin Lemkul
• [gmx-users] Restrain specific lipid residues   Katrina Lexa
  • [gmx-users] Restrain specific lipid residues   Justin Lemkul
    • [gmx-users] Restrain specific lipid residues   Katrina Lexa
• [gmx-users] Deuterium and the meaning of the atomic number parameter   Andrew DeYoung
  • [gmx-users] Deuterium and the meaning of the atomic number parameter   Justin Lemkul
• [gmx-users] Turning off charges of a particular atom type   Andrew DeYoung
  • [gmx-users] Turning off charges of a particular atom type   Justin Lemkul
• [gmx-users] Re: Turning off charges of a particular atom type   Andrew DeYoung
• [gmx-users] rapid change in the angle of simulation cell - regd   ramesh cheerla
  • [gmx-users] rapid change in the angle of simulation cell - regd   Tsjerk Wassenaar
• [gmx-users] energy minimization output   Shima Arasteh
  • [gmx-users] energy minimization output   Erik Marklund
    • [gmx-users] energy minimization output   Archana Sonawani
      • [gmx-users] energy minimization output   Erik Marklund
• [gmx-users] g_tcaf segmentation fault   Stelios Karozis
  • [gmx-users] g_tcaf segmentation fault   lina
• [gmx-users] Impropers in OPLS-AA   Ignacio Fernández Galván
• [gmx-users] something wrong with BlueGene/P   Bao Kai
  • [gmx-users] something wrong with BlueGene/P   Matthew Zwier
    • [gmx-users] something wrong with BlueGene/P   Tsjerk Wassenaar
• [gmx-users] Experiences with Gromacs scaling on US supercomputer centers?   Michael Shirts
  • [gmx-users] Experiences with Gromacs scaling on US supercomputer centers?   David van der Spoel
• [gmx-users] g_tcaf segmentation fault   Stelios Karozis
  • [gmx-users] g_tcaf segmentation fault   lina
• [gmx-users] g_tcaf segmentation fault   Stelios Karozis
  • [gmx-users] g_tcaf segmentation fault   lina
    • [gmx-users] g_tcaf segmentation fault   Justin Lemkul
  • [gmx-users] g_tcaf segmentation fault   Justin Lemkul
• [gmx-users] g_tcaf segmentation fault   Stelios Karozis
  • [gmx-users] g_tcaf segmentation fault   Tsjerk Wassenaar
    • [gmx-users] g_tcaf segmentation fault   Stelios Karozis
      • [gmx-users] g_tcaf segmentation fault   Stelios Karozis
      • [gmx-users] g_tcaf segmentation fault   Tsjerk Wassenaar
      • [gmx-users] g_tcaf segmentation fault   Stelios Karozis
      • [gmx-users] g_tcaf segmentation fault   Tsjerk Wassenaar
• [gmx-users] Glutamate to Alanine Mutation   Sai Kumar Ramadugu
• [gmx-users] Intercalation DNA-Ethidium bromide   Hovakim Grabski
  • [gmx-users] Intercalation DNA-Ethidium bromide   Paulo Netz
• [gmx-users] Do not want to add hydrogens to intial pdb structure   mohan maruthi sena
  • [gmx-users] Do not want to add hydrogens to intial pdb structure   Peter C. Lai
• [gmx-users] distance restraint   Paula Andrea Delgado Pinzon
  • [gmx-users] distance restraint   Justin Lemkul
    • [gmx-users] Re: distance restraint   pauladelgado
      • [gmx-users] Re: distance restraint   Justin Lemkul
      • [gmx-users] g_hbond   Gavin Melaugh
      • [gmx-users] g_hbond   Justin Lemkul
      • [gmx-users] Re: distance restraint   pauladelgado
      • [gmx-users] Re: distance restraint   Justin Lemkul
      • [gmx-users] Re: distance restraint   pauladelgado
      • [gmx-users] Re: distance restraint   Justin Lemkul
      • [gmx-users] Re: distance restraint   pauladelgado
      • [gmx-users] Re: distance restraint   Justin Lemkul
      • [gmx-users] Re: distance restraint   pauladelgado
      • [gmx-users] Re: distance restraint   Justin Lemkul
• [gmx-users] g_clustsize   mohammad agha
  • [gmx-users] g_clustsize   Justin Lemkul
• [gmx-users] doubt in minimization part   Shine A
  • [gmx-users] doubt in minimization part   Justin Lemkul
• [gmx-users] Exclusions in TIP4P   Ignacio Fernández Galván
• [gmx-users] Umbrella sampling-protein-ligand complex   Archana Sonawani
  • [gmx-users] Umbrella sampling-protein-ligand complex   Justin Lemkul
    • [gmx-users] Umbrella sampling-protein-ligand complex   Archana Sonawani
      • [gmx-users] Umbrella sampling-protein-ligand complex   Justin Lemkul
• [gmx-users] provide opt way to perform simulation for protein and peptide -reg   venkatesh s
  • [gmx-users] provide opt way to perform simulation for protein and peptide -reg   Justin Lemkul
• [gmx-users] Re:provide opt way to perform simulation for protein and peptide -reg   venkatesh s
  • [gmx-users] Re:provide opt way to perform simulation for protein and peptide -reg   Justin Lemkul
• [gmx-users] mails of other users in this mailing list   Lara Bunte
  • [gmx-users] mails of other users in this mailing list   Justin Lemkul
• [gmx-users] Notes and warnings using grompp   Sonia Milena Aguilera Segura
  • [gmx-users] Notes and warnings using grompp   Justin Lemkul
    • [gmx-users] Re: Notes and warnings using grompp   Sonia Aguilera
      • [gmx-users] Re: Notes and warnings using grompp   Justin Lemkul
  • [gmx-users] Notes and warnings using grompp   Sonia Milena Aguilera Segura
• [gmx-users] Notes and warning using grompp   Sonia Aguilera
• [gmx-users] Assignment of new velocities for multi-runs   James Starlight
  • [gmx-users] Assignment of new velocities for multi-runs   Peter C. Lai
    • [gmx-users] Assignment of new velocities for multi-runs   Justin Lemkul
      • [gmx-users] Assignment of new velocities for multi-runs   James Starlight
      • [gmx-users] Assignment of new velocities for multi-runs   Justin Lemkul
• [gmx-users] Energy minimization   Shima Arasteh
  • [gmx-users] a question related to grompp command   Acoot Brett
    • [gmx-users] a question related to grompp command   Peter C. Lai
  • [gmx-users] Energy minimization   Justin Lemkul
• [gmx-users] Calculate Density with respect to time...   rama david
  • [gmx-users] Calculate Density with respect to time...   Justin Lemkul
  • [gmx-users] Calculate Density with respect to time...   bharat gupta
    • [gmx-users] Calculate Density with respect to time...   rama david
• [gmx-users] grompp errors..   Ali Alizadeh
  • [gmx-users] grompp errors..   Justin Lemkul
• [gmx-users] make_ndx   Ali Alizadeh
  • [gmx-users] make_ndx   Justin Lemkul
  • [gmx-users] on tpbconv   Acoot Brett
    • [gmx-users] on tpbconv   rama david
• [gmx-users] .itp and .rtp file modifications?   Elie M
  • [gmx-users] .itp and .rtp file modifications?   Justin Lemkul
• [gmx-users] Output of rotation   Shima Arasteh
  • [gmx-users] Output of rotation   Tsjerk Wassenaar
    • [gmx-users] Output of rotation   Shima Arasteh
• [gmx-users] number of coordinates in coordinate file does not match topology -reg   venkatesh s

Last message date: Sun Sep 30 19:06:29 CEST 2012
Archived on: Thu Nov 14 12:13:23 CET 2013

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