[gmx-users] g_nmtraj -temp

Joaquim Rui de Castro Rodrigues joaquim.rodrigues at ipleiria.pt
Sat Sep 15 18:52:13 CEST 2012

Dear gromacs users,

g_nmtraj states that "to make the motion clearly visible in PyMol you
 might want to amplify it by setting an unrealistically high temperature".
What temperature values do you usually need to use? To see nice domain
 movements, I need to set the temperature in the range 100000-500000K.  
Are those unrealistic temperatures “normal”?

Many thanks,
Rui Rodrigues

More information about the gromacs.org_gmx-users mailing list