[gmx-users] About Energy Minimisation
scvsankar_agr at yahoo.com
Wed Sep 19 12:55:47 CEST 2012
Dear Mark Thank you for your previous help
With your Help I Have successfully Constructed .top and .gro for my cyclic peptide After That i Have solvated and added ions . . But when I do Energy Minimization My Molecule after Energy Minimization ( I have Visualized .gro file in VMD) The bond Between N atom of first Residue ( N-terminal) and C atom of last residue (C-terminal end) Has become Broken . How to Avoid this ?
Thanks in Advance
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