[gmx-users] How to a .gro file generated from this .top file?

[Mark Abraham]

On 19/09/2012 11:22 PM, Ali Alizadeh wrote:
> Dear Justin
>
> I prepare a .top file with a combination of input #include and pdb2gmx,
>
> How can i generate a .gro file from this .top file?

You can't - they have radically different kinds of information. Also, 
see 
http://www.gromacs.org/Documentation/File_Formats/Coordinate_File#On_the_need_for_a_.gro_file. 
pdb2gmx wrote a coordinate file that matches its .top, which by default 
will be in .gro format.

Mark