[gmx-users] specific dihedral plotting

[tarak karmakar]

Dear All,

      I need to plot a specific dihedral in  my protein and I have to
see how it is changing with time. So while doing that I have created a
new group for that specific dihedral by taking corresponding 4 atoms.
Now, how could I specify this dihedral present in the index file while
running g_dih program, as I see in the online manual options are as
follows

g_dih -f traj.xtc -s topol.tpr -o dih.out

And it essentially gives the statistics of all the dihedrals.


Thanks ,
Tarak