[gmx-users] why the output of g_saltbr is so large?

[Albert]

On 09/21/2012 10:48 AM, francesco oteri wrote:
> Hi,
> because g_saltbr calculates the data regarding any charge-charge
> interaction ( neg neg, neg pos, pos pos).
> Small problem: every atoms (C,H,S,P...) has a charge so the outputs
> contains the distances among al the
> n*(n-1)/2  atom couples!!!!
>
> Francesco

Hello :

thank you very much for kind reply.
Is it possible simple restrict the calculation to protein sidechain?

thank you very much
best
Albert