[gmx-users] About Presence of Bond In Topology

[vidhya sankar]

Dear Justin Thank you for your Reply

After pdb2gmx When i Visualize the resultant .gro file  of  my cyclic peptide in VMD 

I have Observed the Bond Between  Nitrogen atom (N ) of First residue and Carbon atom (C) of Last residue   I have not observed The same bond when I open and Visualize in Chimera .  Then How Could i Confirm Whether the bond is present or Not?

Thanks in Advance