[gmx-users] packing lipids

[Shima Arasteh]

 In fact, the structure visualized by VMD and choosing line as draw style is ok, but the second structure of protein ( I mean the choosing ribbons) shows a broken structure. How come? what does it mean?

Thanks in advance.


Sincerely,
Shima


----- Original Message -----
From: Justin Lemkul <jalemkul at vt.edu>
To: Shima Arasteh <shima_arasteh2001 at yahoo.com>; Discussion list for GROMACS users <gmx-users at gromacs.org>
Cc: 
Sent: Monday, September 24, 2012 2:09 PM
Subject: Re: [gmx-users] packing lipids



On 9/24/12 6:22 AM, Shima Arasteh wrote:
>
> Dear gmx users,
>
> Is it  possible that the protein got broken during shrinking iteration of packing lipids around the  protein?
>

Only if it were broken to begin with.  This is a rather vague statement; if you 
need further help, you will have to be a lot more specific about what's going on.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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