[gmx-users] packing lipids

Shima Arasteh shima_arasteh2001 at yahoo.com
Mon Sep 24 16:48:17 CEST 2012

 In fact, the structure visualized by VMD and choosing line as draw style is ok, but the second structure of protein ( I mean the choosing ribbons) shows a broken structure. How come? what does it mean?

Thanks in advance.


----- Original Message -----
From: Justin Lemkul <jalemkul at vt.edu>
To: Shima Arasteh <shima_arasteh2001 at yahoo.com>; Discussion list for GROMACS users <gmx-users at gromacs.org>
Sent: Monday, September 24, 2012 2:09 PM
Subject: Re: [gmx-users] packing lipids

On 9/24/12 6:22 AM, Shima Arasteh wrote:
> Dear gmx users,
> Is it  possible that the protein got broken during shrinking iteration of packing lipids around the  protein?

Only if it were broken to begin with.  This is a rather vague statement; if you 
need further help, you will have to be a lot more specific about what's going on.



Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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