[gmx-users] Calculate Density with respect to time...
ramadavidgroup at gmail.com
Sat Sep 29 14:27:59 CEST 2012
Hi Gromacs Users,
I did simulation of two random coil peptides for 100ns.
after 70 ns these peptide get converted to anti parallel beta sheet
I am interested to see the water density in between these peptides w.r.t.
to time change
And at the same time the distance between the peptide..
I found out the distance between peptide by g_mindist
but I not found the appropriate way to calculate density of water with
respect to time
between two peptides..
I used g_density but it not gave me the information as per my need.
Is there any way to solve these problem.
Thank you in advance..
With best wishes and regards..
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