[gmx-users] Compiling Gromacs

[Maciej Masłyk]

Dear all,

I'm facing a problem when compiling Gromacs. This is the message I got:
numa_malloc.c:117:73: error: expected ‘)’ before ‘Processor’
numa_malloc.c:118:78: error: expected ‘)’ before ‘ProcNumber’
numa_malloc.c:121:45: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or 
‘__attribute__’ be                         fore 
‘smalloc_GetNumaProcessorNodeEx’
numa_malloc.c:122:45: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or 
‘__attribute__’ be                         fore 
‘smalloc_GetCurrentProcessorNumberEx’
numa_malloc.c: In function ‘InitNumaHeapSupport’:
numa_malloc.c:151:5: error: ‘smalloc_GetCurrentProcessorNumberEx’ 
undeclared (fi                         rst use in this function)
numa_malloc.c:151:5: note: each undeclared identifier is reported only 
once for                          each function it appears in
numa_malloc.c:151:44: error: ‘func_GetCurrentProcessorNumberEx_t’ 
undeclared (fi                         rst use in this function)
numa_malloc.c:151:79: error: expected ‘;’ before ‘GetProcAddress’
numa_malloc.c:152:5: error: ‘smalloc_GetNumaProcessorNodeEx’ undeclared 
(first u                         se in this function)
numa_malloc.c:152:39: error: ‘func_GetNumaProcessorNodeEx_t’ undeclared 
(first u                         se in this function)
numa_malloc.c:152:69: error: expected ‘;’ before ‘GetProcAddress’
numa_malloc.c: In function ‘ReturnHeapHandle’:
numa_malloc.c:246:5: error: ‘PROCESSOR_NUMBER’ undeclared (first use in 
this fun                         ction)
numa_malloc.c:246:22: error: expected ‘;’ before ‘CurrentProcessorNumber’
numa_malloc.c:285:5: warning: implicit declaration of function 
‘smalloc_GetCurre                         ntProcessorNumberEx’
numa_malloc.c:285:42: error: ‘CurrentProcessorNumber’ undeclared (first 
use in t                         his function)
numa_malloc.c:287:5: warning: implicit declaration of function 
‘smalloc_GetNumaP                         rocessorNodeEx’
numa_malloc.c:324:9: warning: implicit declaration of function 
‘HeapSetInformati                         on’
Makefile:332: recipe for target `numa_malloc.lo' failed
make[4]: *** [numa_malloc.lo] Error 1
make[4]: Opuszczenie katalogu 
`/cygdrive/c/Packages/gromacs-4.5.5/src/gmxlib/thr ead_mpi'
Makefile:599: recipe for target `all-recursive' failed
make[3]: *** [all-recursive] Error 1
make[3]: Opuszczenie katalogu 
`/cygdrive/c/Packages/gromacs-4.5.5/src/gmxlib'
Makefile:302: recipe for target `all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Opuszczenie katalogu `/cygdrive/c/Packages/gromacs-4.5.5/src'
Makefile:238: recipe for target `all' failed
make[1]: *** [all] Error 2
make[1]: Opuszczenie katalogu `/cygdrive/c/Packages/gromacs-4.5.5/src'
Makefile:347: recipe for target `all-recursive' failed
make: *** [all-recursive] Error 1

The configuration went ok. I used :

./configure --prefix=/cygdrive/c/Packages/Gromacs --enable-shared
                  LDFLAGS='-L/cygdrive/c/Packages/fftw/lib/'
                  CPPFLAGS='-I/cygdrive/c/Packages/fftw/include/'

The above error I get after "make" command.
Can you please help me with this as I'm not familiar with linux environment.

Thanks in advance

Maciek