[gmx-users] Re: Illegal instruction (core dumped) - trjconv

[Szilárd Páll]

This error means that your binaries contain machine instructions that
the processor you run them on does not support. The most probable
cause is that you compiled the binaries on a machine with different
architecture than the one you are running on.


Cheers,
--
Szilárd


On Mon, Apr 29, 2013 at 11:28 AM, Steven Neumann <s.neumann08 at gmail.com> wrote:
> On Mon, Apr 29, 2013 at 10:11 AM, Steven Neumann <s.neumann08 at gmail.com>wrote:
>
>> Dear Gmx Users,
>>
>> I produced my trajectory using Gromacs 4.6 on GPUs.
>> When I try:
>>
>> trjconv -s md298_gpu.tpr -f md298_gpu.xtc -pbc mol -ur compact -o
>> md298_gpuURcomp.xtc
>>
>> Select a group: 0
>> Selected 0: 'System'
>> Reading frame       0 time    0.000
>> Precision of md298_gpu.xtc is 0.001 (nm)
>> Using output precision of 0.001 (nm)
>> Back Off! I just backed up md298_gpuURcomp.xtc to ./#md298_gpuURcomp.xtc.2#
>> Illegal instruction (core dumped)
>> Would you advise?
>>
>> Steven
>>
>
> What I found out is that options -pbc mol or -pbc whole does not work and
> give this error.
>
> Any suggestions please?
>
> Steven
>
>>
>>
>>
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> * Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists