[gmx-users] The sum of the two largest charge group radii ..is larger than rlist

Kavyashree M hmkvsri at gmail.com
Tue Aug 6 11:43:18 CEST 2013


Ok Thank you.

Regards
Kavya


On Tue, Aug 6, 2013 at 3:02 PM, Justin Lemkul <jalemkul at vt.edu> wrote:

>
>
> On 8/6/13 2:35 AM, Kavyashree M wrote:
>
>> Dear users,
>>
>>
>> After EM step while running NVT I gor a warning saying -
>>
>> Largest charge group radii for Van der Waals: 3.798, 1.293 nm
>> Largest charge group radii for Coulomb:       7.565, 3.798 nm
>> The sum of the two largest charge group radii (11.362685) is larger than
>>    rlist (1.400000)
>>
>> But this error was not there while EM -
>> Largest charge group radii for Van der Waals: 0.039, 0.039 nm
>> Largest charge group radii for Coulomb:       0.084, 0.084 nm
>> Calculating fourier grid dimensions for X Y Z
>> Using a fourier grid of 100x100x100, spacing 0.119 0.119 0.119
>>
>>
>> I was not able to check this error in mailing list as the page was
>> not opening.
>>
>>
> Everything on the Gromacs site appears to be working now.  The explanation
> is given on the error page.  If you're not using Gromacs 4.6.3, upgrade -
> there is a possibility this is a small bug that has already been fixed.
>
> -Justin
>
> --
> ==============================**====================
>
> Justin A. Lemkul, Ph.D.
> Postdoctoral Fellow
>
> Department of Pharmaceutical Sciences
> School of Pharmacy
> Health Sciences Facility II, Room 601
> University of Maryland, Baltimore
> 20 Penn St.
> Baltimore, MD 21201
>
> jalemkul at outerbanks.umaryland.**edu <jalemkul at outerbanks.umaryland.edu> |
> (410) 706-7441
>
> ==============================**====================
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