[gmx-users] Regarding g_densmap output

[Chandan Choudhury]

On Fri, Aug 30, 2013 at 11:18 AM, Venkat Reddy <venkat4bt at gmail.com> wrote:

> Dear Gromacs users,
> I am analyzing the density of my spherical lipid vesicle using g_densmap
> tool with the following options.
>
>   g_densmap -f vesicle_noPBC.xtc -s vesicle-12us.tpr -n index.ndx -dt 1000
> -od  -amax 6 -rmax 6 -mirror
>
> I am getting densmap.dat as output, which is a text file. How to analyze
> this text file? Also Please suggest me any tool which can convert this text
> file to some visually appealing grid map or a 2D (or) 3D graph?
>
use xpm2ps.

>
> Thanks for your valuable time
>
> --
> With Best Wishes
> Venkat Reddy Chirasani
> PhD student
> Laboratory of Computational Biophysics
> Department of Biotechnology
> IIT Madras
> Chennai
> INDIA-600036
> --
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