[gmx-users] Regarding g_densmap output

[Venkat Reddy]

But its not a xpm file. Its a dat file


On Fri, Aug 30, 2013 at 12:05 PM, Chandan Choudhury <iitdckc at gmail.com>wrote:

> On Fri, Aug 30, 2013 at 11:18 AM, Venkat Reddy <venkat4bt at gmail.com>
> wrote:
>
> > Dear Gromacs users,
> > I am analyzing the density of my spherical lipid vesicle using g_densmap
> > tool with the following options.
> >
> >   g_densmap -f vesicle_noPBC.xtc -s vesicle-12us.tpr -n index.ndx -dt
> 1000
> > -od  -amax 6 -rmax 6 -mirror
> >
> > I am getting densmap.dat as output, which is a text file. How to analyze
> > this text file? Also Please suggest me any tool which can convert this
> text
> > file to some visually appealing grid map or a 2D (or) 3D graph?
> >
> use xpm2ps.
>
> >
> > Thanks for your valuable time
> >
> > --
> > With Best Wishes
> > Venkat Reddy Chirasani
> > PhD student
> > Laboratory of Computational Biophysics
> > Department of Biotechnology
> > IIT Madras
> > Chennai
> > INDIA-600036
> > --
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-- 
With Best Wishes
Venkat Reddy Chirasani
PhD student
Laboratory of Computational Biophysics
Department of Biotechnology
IIT Madras
Chennai
INDIA-600036