[gmx-users] Reg Mpi run Error

vidhya sankar scvsankar_agr at yahoo.com
Sat Aug 31 10:54:00 CEST 2013


Dear Jutin and Marks  Thnak you for your previous  reply
Whrn i run the following job in cluster  as follows

[hinditron at compute002 gromacs-plumed-cpu-input]$ mpirun -np 8 -machinefile ~/myhosts mdrun_mpi -s CNTPEPRSOLIONSfullcputest.tpr   -v -deffnm CNTPEPRSOLIONSfull -cpt 2

I have eceived the error as follows
Sisters Have Always Fascinated Me" (Speech)
Error on node 3, will try to stop all the nodes
Halting parallel program mdrun_mpi on CPU 3 out of 8
Halting parallel program mdrun_mpi on CPU 4 out of 8
gcq#33: "Sisters Have Always Fascinated Me" (Speech)
[cli_6]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 6
gcq#33: "Sisters Have Always Fascinated Me" (Speech)
gcq#33: "Sisters Have Always Fascinated Me" (Speech)
[cli_3]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 3
[cli_2]:
gcq#33: "Sisters Have Always Fascinated Me" (Speech)
[cli_5]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 5
aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 2
gcq#33: "Sisters Have Always Fascinated Me" (Speech)
[cli_4]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 4

===================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   EXIT CODE: 65280
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES


what is the meaning of above error  How to solve it?

Thanks in advance



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