[gmx-users] Reg Mpi run Error

[Justin Lemkul]

On 8/31/13 4:54 AM, vidhya sankar wrote:
> Dear Jutin and Marks  Thnak you for your previous  reply
> Whrn i run the following job in cluster  as follows
>
> [hinditron at compute002 gromacs-plumed-cpu-input]$ mpirun -np 8 -machinefile ~/myhosts mdrun_mpi -s CNTPEPRSOLIONSfullcputest.tpr   -v -deffnm CNTPEPRSOLIONSfull -cpt 2
>
> I have eceived the error as follows
> Sisters Have Always Fascinated Me" (Speech)
> Error on node 3, will try to stop all the nodes
> Halting parallel program mdrun_mpi on CPU 3 out of 8
> Halting parallel program mdrun_mpi on CPU 4 out of 8
> gcq#33: "Sisters Have Always Fascinated Me" (Speech)
> [cli_6]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, -1) - process 6
> gcq#33: "Sisters Have Always Fascinated Me" (Speech)
> gcq#33: "Sisters Have Always Fascinated Me" (Speech)
> [cli_3]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, -1) - process 3
> [cli_2]:
> gcq#33: "Sisters Have Always Fascinated Me" (Speech)
> [cli_5]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, -1) - process 5
> aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, -1) - process 2
> gcq#33: "Sisters Have Always Fascinated Me" (Speech)
> [cli_4]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, -1) - process 4
>
> ===================================================
> =   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> =   EXIT CODE: 65280
> =   CLEANING UP REMAINING PROCESSES
> =   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
>
>
> what is the meaning of above error  How to solve it?
>

These are generic mpirun failure messages.  The real error is further up in the 
screen output or in the .log file.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441

==================================================